Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq22 203 4e-47 seq244 127 3e-24 >seq22 Length=626277 Score = 203 bits (224), Expect = 4e-47 Identities = 1113/1748 (64%), Gaps = 58/1748 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTC-TGT 111670 ||||| | ||||| | ||||| || | ||||| ||||| |||||| |||| | ||| Sbjct 348092 CCACAACATATGTTTCTTCGGGTAGCTTTAGGTATTCATGGAGAAGAT-TTGAAACGTGT 348034 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 ||| ||||| || ||||| | || | || | || || || |||||| | || Sbjct 348033 AAAGGAAACATATGATTTAATGTCTCTGGGATTTTTTACACATGCCACTCCAACCTTATT 347974 Query 111731 CAACGCTGGTACACCAAGACCCCAAATG--TCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 ||| ||||||||||| || |||||| | || ||||||||| |||||| | || Sbjct 347973 TAACTCTGGTACACCATACCCACAAATGAGTTCA--TGTTTCCTTGTTGCAATGCAAGAA 347916 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||| || | || ||||| | || || | | ||||| ||| || |||| Sbjct 347915 GATAGTATTGAGGGAATTTATGATACACTTAAACAGTGTGCTATTATCAGTAAAATGGCT 347856 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGC--CAACAAGTCTCGTATTAGAGGTA 111906 |||||||| || | || | ||| || | | | | |||| |||| ||| | Sbjct 347855 GGTGGTATTGGTGTTCATGTTCATAATATTCGCTCTGCTGGAAGTTA--TATTGCAGGAA 347798 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | ||||| |||| |||| || | || |||||||| || | || |||||| || | Sbjct 347797 CGAATGGAACATCAAATGGACTTGTACCGATGCTTCGTGTGTGGAATAACACAGCTCGTT 347738 Query 111967 ATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 ||||| | |||| ||| || |||||||| | | || || |||||||| || |||| Sbjct 347737 ATGTAGATCAAGGTGGTGGTAAACGCAAGGGTGCGTTTGCTGTTTATCTTGAACCTTGGC 347678 Query 112024 ACGCGGATATCATGGAGTTCCT-TGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 | | ||||| | | ||||| | | | | | | || | || || || Sbjct 347677 ATGGAGATATTTTTAACTTCCTCTTACTAAAGAAGAATACT-GGAAAAGAAGATCAACG- 347620 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||| || || ||||| | || || |||||||| ||| | |||||| | | || || | Sbjct 347619 TGCACGTGACCTCTTTTATGCCCTGTGGATTCCTGATTTATTCATGGAACGTGTGGAAAA 347560 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 ||| || ||| | || | |||| | | ||||| || | || || ||| Sbjct 347559 ACGTGATAAGTGGACACTTATGGATCCAAATACTGCACCAGGATTAAGTGACTGTTATGG 347500 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA---GGAAGAAAGTCGGGCGACTGCGA 112257 |||||| ||| | | | || | || || ||||| | || | | | | | Sbjct 347499 -TGAGGAATTTAATGAGTTATATGAACGTTATGAAAAGGAAGGACGTGGTGTAAAAACAA 347441 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | | ||| ||| | ||| ||||| || | || |||| || || || | Sbjct 347440 ---TTCAAGCACAAGATCTTTGGTTTGCTATACTTGAATCACAAATGGAAACAGGAGTTC 347384 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | |||||| || ||||| || ||||| | || || || || || | ||||| | Sbjct 347383 CTTTTATGCTCTATAAAGATGCATGTAATAAGAAATCGAACCAGAAAAACATTGGTGTAA 347324 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| |||| || | || ||||||||| |||||| || |||||||| | || | Sbjct 347323 TCAAGTGTTCTAATTTATGCACAGAAATCATGGAATACTCATCTAAAGATGAAATTGCAG 347264 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | |||||||| || || || ||| | || | | | ||| || | ||| |||| Sbjct 347263 TATGTAACCTTGCTTCTATTGCTTTACCTCGTTTTATTGATGAGGAAAAAAATGTTTTTG 347204 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 || | || ||| | ||| | || ||| ||| |||| ||| | ||||||||||||| Sbjct 347203 ATCACCAACGACTATATGAAATAACAAAAGTTGTGACAAGAAATTTGAACAGAGTTATTG 347144 Query 112558 ATAGAAATTTTTACCCCGTTGAGAC-TGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 ||| |||| ||| ||||| || || || | ||||||| | | || || || Sbjct 347143 ATATGAATTATTA-TCCGTTACCACAAGCACGCGACAGTAATATGCGTAATCGACCTATC 347085 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC---ATTCTTTGTCGCCACGCATTTGAT 112673 ||| | ||||| ||||| | || ||| ||||| || || | | | ||||| | Sbjct 347084 GGTATTGGTGTACAAGGAATGGCAGATTTATTCACAATGCTAAGACTTC---CATTTACT 347028 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 | | || || || | |||| || ||||||||||| ||| ||||||| | Sbjct 347027 AGCAGTAAGGCTAAAGATTTAAATGAAGAAATTTTTGAGACAATTTATTACGCCGCAGTG 346968 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || || || || | || || | || || |||||||||| ||| | || ||| Sbjct 346967 GAAGCTAGCGTCGATCTTGCTGAAGAAGAAGGACCATATGAAAGATTTCAAGGGAGTCCT 346908 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCAAGC--TTCAC-- 112847 ||||| ||||| | | |||||||| |||| || || | |||| || | || Sbjct 346907 GCTTCTCAAGGTTTATTACAATTTGATTTATGGGGTAA---AAAACCACGCAGTGGACGG 346851 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT-- 112905 | ||||||| || || |||||||| | || || ||| | | | | ||||| Sbjct 346850 TGGAACTGGGATGCACTTAAGGAACGTGTTAAAACGAGTGGTAT--GAGAAATTCTTTAC 346793 Query 112906 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 112965 | |||| ||||||||||| || || || | ||||| | ||||||||||| || |||| Sbjct 346792 TCTTGGCTCCAATGCCAACTGCATCAACATCTCAAATTCTTGGTAATAATGAGTGTTTTG 346733 Query 112966 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 113025 |||||| || | || || ||| | | | || || || || |||| | Sbjct 346732 AACCCTTTACTTCCAATATTTATGTACGTCGTGTTCTAAGTGGTGAATTCCCTGTTGTTA 346673 Query 113026 ACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 113085 | ||| |||| || || || | | |||| || ||| | |||||| ||| Sbjct 346672 ATAAGTATCTTGTTATGGATCTTATTAAACTTGGACTTTGGAATGATGATATGCGAAATC 346613 Query 113086 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGA 113145 || | | |||||| |||| ||||| ||| |||||| ||| ||||| Sbjct 346612 AGATTATTGCATATAATGGTTCAGTTCAGAATATCAAGGAAATTCCATCTGATCTTAAGG 346553 Query 113146 AGTTGTACCGCACAGTT---TGGGAAA-TCAAGATGAAGGATGTCATTGACATGGCCGCA 113201 | || || | |||| ||||||| || | | || ||| | ||||| ||||| || Sbjct 346552 AATTATA---TAAAGTTGTCTGGGAAATTCGACA-GAGAGATTTGATTGATATGGCAGCG 346497 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAAC- 113260 |||||||| | | ||||||| ||||||||| | |||||||| |||||| ||||| Sbjct 346496 GATCGTGGAAAATACGTTGATCAGAGTCAAAGTTTAAATCTATTTTTGGAAAAACCAACC 346437 Query 113261 -GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 113319 | ||| || | | |||||||| | |||| ||||| ||||| || ||||| | Sbjct 346436 TCAAGTC--AGTTGACATCTATGCATTTCTACACATGGAAATCTGGTCTAAAGACGGGTA 346379 Query 113320 TGTATTAC 113327 |||||||| Sbjct 346378 TGTATTAC 346371 >seq244 Length=386007 Score = 127 bits (140), Expect = 3e-24 Identities = 170/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| ||| |||||||||| || ||||| ||||| ||||| || |||| || Sbjct 101080 GCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGG----AT 101135 Query 102159 ACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 102217 | ||| || || || || ||||| ||| | ||||| || || |||||||| || Sbjct 101136 CCGCAGTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATT 101195 Query 102218 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 ||||||||| || |||||||| | | ||||| |||||||| ||||| ||||| || || Sbjct 101196 CTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACT 101255 Query 102278 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| ||||||||| ||||| || || ||||| || || || |||||| Sbjct 101256 GACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGCG 101310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739924789680