Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq22 141 1e-28 seq244 104 3e-17 seq133 87.8 2e-12 seq66 82.4 9e-11 >seq22 Length=626277 Score = 141 bits (156), Expect = 1e-28 Identities = 672/1052 (64%), Gaps = 33/1052 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 |||||||||||||| || ||||||| ||||||| ||| | |||||| || | | | Sbjct 346372 TAATACATACCCGTCTTTAGACCAGATTTCCATGTGTAGAAATGCATAGATGTCAACT-- 346429 Query 109474 GAA---AGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 || || || || | |||| ||| | || | ||| |||||| | | || Sbjct 346430 GACTTGAG-GTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAACGTATTTT 346488 Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 |||||||| || ||||| || || | | | || | ||||||||||||| || || Sbjct 346489 CCACGATCCGCTGCCATATCAATCAAATCTCTCTGTCGAATTTCCCAGACAACTTTATAT 346548 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCA---GCCTTC 109647 || | ||| | |||| ||||| ||| ||| || |||| || ||| | || | Sbjct 346549 AATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTATATGCAATA 346608 Query 109648 ACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGA 109707 | | ||| || ||| || | ||| || || | || | ||||| ||||||| Sbjct 346609 ATC-TGATTTCG--CATATCATCATTCCAAAGTCCAAGTTTAATAAGATCCATAACAAGA 346665 Query 109708 TGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTG 109767 | ||| || || || ||||||||| || || || | || || || | || Sbjct 346666 TACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAATATTGGAAGTA 346725 Query 109768 TAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGA 109827 ||||||| ||||||||||| || || || ||||| | || || || || ||||| ||| Sbjct 346726 AAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGTTGGCATTGGA 346785 Query 109828 GCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAA 109887 |||| ||| | | |||| | ||| |||| || || || || | ||| ||||| Sbjct 346786 GCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAGTGCATCCCAG 346845 Query 109888 TCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCA 109947 | | || ||||| | | | ||| ||| | ||| ||| | || ||| | | Sbjct 346846 TTCCACCGTCCACTGCGTGGTTTTTTACC---CCATAAATCAAATTGTAATAAACCTTGA 346902 Query 109948 GCAGCAGGAGAACCCTTGAAA-CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGA 110006 | ||||||| ||||||||| || || || | || || | || || | ||| Sbjct 346903 GAAGCAGGACT-CCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAGATCGACGCT 346961 Query 110007 AGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACT- 110065 ||| || | ||| || | ||| || ||||||||||| | |||| | || || Sbjct 346962 AGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTCTTCATTTAAATCTTTAGCCTT 347021 Query 110066 -CTTCACAGTCGAAGGGAAGAC----CACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 || | ||| || ||||| | || ||||||| || || | || || || Sbjct 347022 ACTGCT-AGTA-AATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATTCCTTGTAC 347075 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 ||| | ||| || || |||| ||| ||| | || || | || || ||| | Sbjct 347076 ACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAACGGATAATA 347135 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 || || || || | || | ||| | |||||| || || ||||||| ||| Sbjct 347136 ATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCATATAGTCG 347195 Query 110241 GTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | || ||| || | |||| | |||| || | | | || | ||||||||| ||| Sbjct 347196 TTGGTGATCAAAAACATTTT--TTTCCTCATCAATAAAACGAGGTAAAGCAATAGAAGCA 347253 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 || || || || | | | || ||||| | |||||||| ||||| || || || || Sbjct 347254 AGGTTACATACTGCAATTTCATCTTTAGATGAGTATTCCATGATTTCTGTGCATAAATTA 347313 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 |||| ||| || ||||| | ||| ||||| |||||||| || |||||||| |||||| Sbjct 347314 GAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAG 347373 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||||| | || || |||||| | ||||| Sbjct 347374 AGCATAAAAGGAACTCCTGTTTCCATTTGTGA 347405 >seq244 Length=386007 Score = 104 bits (114), Expect = 3e-17 Identities = 523/815 (64%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| ||| |||| || ||||| |||||||| || | | || || | |||||| Sbjct 101600 TACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCATA 101541 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTG-GTTGACCAACTTGTTTCAGAAGACG 119326 |||||||| ||||| || || || | | || |||| |||| | ||| || || Sbjct 101540 AAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTG-CCAAGTGCGACCAGCAGTCG 101482 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 || | || | || || ||| | ||| ||||| ||||| || || || | || Sbjct 101481 GTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAG-TCGCA 101423 Query 119387 CGGGA-GAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | ||| | |||||| |||||| | |||||||||||| || || | ||| | Sbjct 101422 CTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCAT 101363 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAG-AGTTT--AAACAACTCTACGGCAAATT 119502 | || || | | | ||||| | | |||| | |||| ||||| | Sbjct 101362 GGATTCGCTCCTTTGGCAGCTTGTTGACAATGTAGTTCTCATACAAGAGGCACGCAAAGT 101303 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | ||| || || |||||||| ||||||||||| || ||||| ||||| ||||| | Sbjct 101302 CGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCA 101243 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||| || | || || || ||||| ||||| || ||||||| Sbjct 101242 GACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCA 101183 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGA 119681 | |||||| || | |||||||| || || | |||| || || || |||| || Sbjct 101182 CCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCAC-TGCGGATCCACCGGATC 101124 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||| | ||||| || || || || | ||| |||||| | | ||| | | | Sbjct 101123 GCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCC 101064 Query 119742 TTTTCAGCACCA--TCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAA 119799 || || |||| || | || || |||| | || ||||| ||||| || | Sbjct 101063 TTCTC--TACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCA 101006 Query 119800 CCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC- 119857 | | ||| || | || ||| | | || || |||| |||| | | ||||| || Sbjct 101005 CATTCTCAATG-GCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCT 100947 Query 119858 GTCAGCAAAATTGTTGT-TGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATG 119916 |||| || | ||| | || || | |||||||| || |||||||||| | Sbjct 100946 GTCA--TGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACG 100889 Query 119917 CTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATAT 119976 | | || || ||| ||||| | |||| |||||| || | | |||||| |||||| Sbjct 100888 CAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCAGTCCACCATAT 100829 Query 119977 CTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTA 120011 | || || || | ||| || |||||||| || Sbjct 100828 CATTGCCCAGATCAATCTCCTCCACTGTCCAGATA 100794 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 || ||||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 120747 TCCTATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 120688 Query 136772 CCGTTGGGAACAG 136784 | ||||||| ||| Sbjct 120687 CTGTTGGGAGCAG 120675 >seq133 Length=495741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 73647 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 73588 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 73587 CTGTTGGGAGCATCTTTT 73570 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 || ||||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 178791 TCCTATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 178732 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 178731 CTGTTGGGAGCATCTTTT 178714 >seq66 Length=549782 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 || ||||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 370992 TCCTATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 370933 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || |||| Sbjct 370932 CTGTTGGGAGCAATTTTT 370915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973651458200