Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq133 118 1e-21 >seq133 Length=495741 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 153201 AGTCTTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTT 153260 ||| | || || ||||||||||||| ||||||| || ||||| |||| ||||| || Sbjct 474491 AGTATGATTGGACAAGGATACTATGAGTCCATTACTCCACCAGTAATACTTCGAAATATT 474550 Query 153261 CTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGA 153320 |||| || ||| | ||||| || | |||||||| ||||||||||| ||||| || ||| Sbjct 474551 ATTGAAAACCCTGGATGGTATACTCCCTACACTCCTTATCAAGCTGAAATATCACAAGGA 474610 Query 153321 AGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATA 153380 | |||| || | || |||| || || |||| | || | ||| | | || Sbjct 474611 CGTCTGGAGTCTCTTTTAAATTTTCAGACTGTCATAATTGATTTAACAAAAATGGATGTA 474670 Query 153381 GCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || ||||| || |||||| |||| |||||| | ||||||||| Sbjct 474671 GCGAATGCATCACTTTTAGATCAAGCTACTGCATGCTCTGAAGCAATG 474718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210490388960