Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq244 143 6e-29 >seq244 Length=386007 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || ||||| ||||| || || || || | || || || Sbjct 42342 ACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTCC 42283 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || |||||||| || ||||| || || ||||| || || ||||| ||| Sbjct 42282 AGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGA 42223 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || ||||||| ||||| ||||| || |||| || ||||| Sbjct 42222 ATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTTG 42163 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || |||||||| | ||||| Sbjct 42162 CCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477065340673