Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq22 235 6e-57 >seq22 Length=626277 Score = 235 bits (260), Expect = 6e-57 Identities = 588/881 (67%), Gaps = 36/881 (4%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTT 47937 || ||||| || || |||||||| || | |||| || ||| ||||| | || |||| Sbjct 347242 GCAATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAGATGAGTAT--TCCATGATTT 347299 Query 47938 CAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTT 47995 | | |||| |||| ||| ||||| ||| | |||| || || ||| || || Sbjct 347300 CTGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTC--TTATT 347357 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 |||||| || || || ||||||||||| ||| ||||| || || ||||||| |||| Sbjct 347358 ACATGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGC 347417 Query 48056 TTTCCAAACA----GTCCTAGCCTT--TATAACAGCTCTAGCTTTATTATCAT---GTTC 48106 ||||| | || || | || | | ||| | | ||| || |||| |||| Sbjct 347418 AAACCAAAGATCTTGTGCTTGAATTGTTTTTACACCACGTCCTTCCTTTTCATAACGTTC 347477 Query 48107 GTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGA-CAT 48164 |||||||| | |||||| || ||||| ||| | || || || || || Sbjct 347478 ---------ATATAACTCATTAAATTCCTCACCATA-ACAGTCACTTAATCCTGGTGCAG 347527 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCAT-TTTTTACTCTAGT--CATAAATATA 48221 | ||| ||| ||| | || ||| || |||| ||||| | | || ||| |||| | Sbjct 347528 T-ATTTGGATCCATAAGTGTCCA---CTTATCACGTTTTTCCACACGTTCCATGAATAAA 347583 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 || || ||||| || || ||| | || | | | | | ||||| || ||| ||||| Sbjct 347584 TCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTC 347643 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | || ||| || |||| | ||||| ||||||| ||||| | ||| | || | Sbjct 347644 TTCTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAAC 347703 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 |||| |||||| ||| |||||||||| ||| | || || || || | || | Sbjct 347704 GCACCCTTGCGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGA 347763 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 | ||| || |||| ||||||||| | ||||| ||||| | ||||||||||||| || Sbjct 347764 AGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAG 347823 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | |||||| || || ||| |||||||| ||||||||| || | ||||||| || Sbjct 347824 CGAATATTATGAACATGAACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGT 347883 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| |||||||||||||| || |||||||| ||| ||| | || ||||| | Sbjct 347884 TTAAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAA 347943 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 |||||| || | || || || |||||||| ||||||| ||||| |||| || Sbjct 347944 CTCATTTGTGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAAT 348003 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCT 48701 | || | || | ||||||||| | ||| | | ||| | ||| |||||| Sbjct 348004 CCCAGAGACATTAAATCATATGTTTCCTTTACACGTTTCAAATCTTCTCCATGAATACCT 348063 Query 48702 ATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 | || ||| || | ||||||| ||| || | || ||||| Sbjct 348064 AAAGCTACCCGAAGAAACATATGTTGTGGACGCTCTACAAT 348104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106558591160