Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq133 170 2e-36 seq275 98.7 8e-15 seq258 95.1 1e-13 seq166 93.3 3e-13 seq249 86.0 5e-11 >seq133 Length=495741 Score = 170 bits (188), Expect = 2e-36 Identities = 378/556 (68%), Gaps = 22/556 (4%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| ||| | || || || ||| |||||||||||| | | |||| || Sbjct 161131 GCTATTGGTATTGATCTTGGCACAACCTATTCTTGTGTTGGTGTCTTCAAGAATGACCAA 161072 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || || ||||||||||| ||| | || || || || ||||| | || || Sbjct 161071 GTGGAGATCATCGCTAATGATCAAGGAAACCGCACAACACCTTCATATGTGGCGTTTACA 161012 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCA 550169 || || || | | | ||||||||||| ||||| |||||| || || ||||| |||| Sbjct 161011 GAGACAGAGCGTCTTGTTGGTGATGCCGCAAAGAATCAAGTGGCAATG--AATCCAACCA 160954 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | || | |||||||| |||||| | ||||| | | ||| ||||| | | | ||| Sbjct 160953 ACACAGTCTTTGATGCGAAACGTATGATTGGTCGCAAGTTTGATGATCCTGATTTGCAGT 160894 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTT---TCTGGAAAACC--TTATA- 550283 | ||||||||||| ||||| || | |||| ||| |||||| || | || Sbjct 160893 CTGATATGAAGCACTGGCCCTT---TAAGGTTACAGTTCGAGATGGAAAGCCAGTGGTAC 160837 Query 550284 --TTGAAGCTACTCATGAAG-GATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTA 550340 || || || ||| | | || | | ||| | ||| ||||| |||| | | Sbjct 160836 AGGTGGAG-TA-TCAAGGCGAGACC---AAGACATTCTTC-CCAGAGGAAATCAGTGCGA 160783 Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATG 550400 ||||| | |||||||| ||| ||| || | | |||||| | || | | | | Sbjct 160782 TGGTTCTGGGAAAAATGAAGGAAATAGCAGAAGCATATATTGGTCTACCCGTAAAGAAGG 160723 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 | || | || || || ||||| |||||||| || || || || ||||| || ||||||| Sbjct 160722 CGGTGGTGACAGTTCCCGCATACTTTAATGATTCGCAGCGACAGGCTACAAAGGATGCTG 160663 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | ||||||||| | |||| | |||||||| ||||| || || |||||||| ||| Sbjct 160662 GTGCTATTGCTGGTTTGGATGTGTTACGTATTATTAATGAGCCAACAGCTGCTGCCATTG 160603 Query 550521 CATATGGACTTGATAA 550536 | || || | ||||| Sbjct 160602 CCTACGGTATGGATAA 160587 Score = 111 bits (122), Expect = 1e-18 Identities = 210/304 (69%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 552123 GTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAAT-GTTAAGTTCTTATTT 552181 ||| | ||||||||||| || | ||||| |||| |||| ||| || ||| ||| Sbjct 160141 GTGTTGGTTGGTGGATCCACTCGTATTCCACGTATTCAACAAATTGTTCAGAACTTCTTT 160082 Query 552182 CAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGC 552241 | |||||| || ||| | ||||||| ||||||||||| || ||||||||||| Sbjct 160081 GGA-GGTAAAGAACCCAATCGTTCTATTAATCCTGATGAGGCTGTGGCTTATGGTGCCGC 160023 Query 552242 AATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATATTGTACTTG 552300 | || ||| |||||| ||||| | | |||||| ||| || || | | Sbjct 160022 CGTACAGGCACATATTCTCTCTGGTGGACGTTCTGAAAAGACT-GAAGGACTTCTGTTAC 159964 Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 | ||||| || ||||| ||||||||| | ||||| | |||||| ||||| || ||||| Sbjct 159963 TGGATGTAACACCTCTTTCTCTTGGTGTGGAAACTGCTGGAGGAGTTATGTCTGTTCTTA 159904 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | | | || ||||| | ||| | ||||||| | |||| ||||| || | |||| Sbjct 159903 TTCCTCGTAACTCTACTGTGCCTATTCAAAAATCGCAGATATTCTCTACCAATGCTGATA 159844 Query 552421 ATCA 552424 |||| Sbjct 159843 ATCA 159840 >seq275 Length=1012172 Score = 98.7 bits (108), Expect = 8e-15 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 ||||||||||| || || ||||| || ||||||||| | |||||| | || ||||| ||| Sbjct 608615 GATTTTTCTTCTCCTAACATTGCAAAGGAAATGCATGTGGGACATCTCCGATCTACAATT 608674 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 ||||| ||| || | || | | | |||||| ||| | | |||||||| ||||| Sbjct 608675 ATTGGTGAAGCTATTAGTCGCCTTTTTGAATACTGTCAGTTTGATGTTCATCGCATCAAT 608734 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATA 930831 || | ||||||||||| || ||||| ||| | ||| ||||| Sbjct 608735 CACGTGGGTGATTGGGGTACTGCCTTTGGAATGCTTATT--TTATA 608778 >seq258 Length=245094 Score = 95.1 bits (104), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 390809 TAATACCATTATCACCATATACACATTGAATTAATTTGTCATTGGCATTTCTTACGGTAC 390868 |||| |||| |||||||| | | |||||| | || | ||||||||| | || |||| Sbjct 204809 TAAT-CCATCTTCACCATACATAAGTTGAATAAGTTCTTGATTGGCATTACGAACTGTAC 204751 Query 390869 CATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAG 390928 ||||||| | | | || ||||| || ||||| | ||| | || | |||||||| Sbjct 204750 CATCATATGCGGCATGAACATCTTCCAATGCTTTAATAAGTTTACGCTGTAGATAACCAG 204691 Query 390929 TGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGA 390988 | |||| || || | || |||| ||||| ||||| | ||||||||| ||||||| Sbjct 204690 TATCTGATGTCTTCACAGCTGTATCAATAAGTCCTTCACGTCCTGCCATGGTATGGAAGA 204631 Query 390989 AAAATTC 390995 ||||||| Sbjct 204630 AAAATTC 204624 >seq166 Length=457962 Score = 93.3 bits (102), Expect = 3e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 |||||| || || || || |||||||||||||| | || || || ||| || | ||| Sbjct 71205 TGCAGTCATTACAGTTCCCGCATATTTTAATGATGCGCAGCGAGAACGTACGAAGGCTGC 71264 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||| || || ||| | || || |||||| | |||||||| ||||||||||| || Sbjct 71265 TGCCCGTATCGCCGGTCTTGAGGTACTCCGTATTGTGAATGAACCAACTGCTGCTGCGCT 71324 Query 550519 -TGCATATGGACTTG 550532 ||| ||||| |||| Sbjct 71325 GTGC-TATGGTCTTG 71338 >seq249 Length=322816 Score = 86.0 bits (94), Expect = 5e-11 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 399569 ATATGACAAGGAGGTAATGCCAtttttt-tAATGTCGACAGGATTCCATAAACTTATAAT 399627 ||||||||||| ||||| |||||| | ||| | || | ||||||||| | | | ||| Sbjct 217461 ATATGACAAGGTGGTAAAGCCATTCGTGATAAAGCCG-CGGGATTCCATGCAGTGACAAT 217403 Query 399628 TATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATTTAATT-GATCAA 399686 ||||| | ||||| |||||| | | || | || | || || ||||||| |||| | Sbjct 217402 CATTCTTCTATCATCTGGATTTGTTTTTATGGTCTCCAC-CACTTGTTTAATTTGATCCA 217344 Query 399687 TTCCTTGATCATGATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATTT 399746 |||| ||| ||||| |||||| ||| | ||| | || || || |||| | || Sbjct 217343 CCCCTTTTCCATCATAATTGGTTTTATAATCTTTATACTCCGCACCAAAGTGTCGCCATT 217284 Query 399747 GAAATCCATAACCGGGGCCAATATC 399771 |||||||||| | || |||| ||| Sbjct 217283 GAAATCCATAGACAGGACCAAGATC 217259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029279129841310