Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq244 123 2e-23 >seq244 Length=386007 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || |||||| ||| || ||||| ||||| || | || | || Sbjct 42351 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGG 42292 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| || || ||||||||||||| ||||| |||||| Sbjct 42291 CCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCC 42232 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | |||| || ||||||||||| | | | Sbjct 42231 TTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCA 42172 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || ||||| || |||||||| Sbjct 42171 ATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936118986037