Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq252 87.8 4e-12 >seq252 Length=282001 Score = 87.8 bits (96), Expect = 4e-12 Identities = 253/384 (66%), Gaps = 19/384 (5%) Strand=Plus/Minus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 |||||||||| ||||| ||||| || || || || || || || ||||| || | | Sbjct 34652 TTGGTGAACCTGGTGTGGGTAAGACCGCCATTGTGGAGGGTTTGGCCCAACGTATTGTGA 34593 Query 150462 ATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCT----TTGAATATGGGT 150517 |||||| || || || || ||| | ||| | | | |||| |||||| Sbjct 34592 GTGGTGAGGTGCCGGAGAGCATTAAAAACA---AAAAGGTATATGCACTTGA-TATGGGA 34537 Query 150518 GCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTA 150577 | || ||||| |||| |||||||||||||| |||||||| || || | || Sbjct 34536 TCCCTTGTGGCTGGAGCTAAATATCGTGGTGAATTTGAAGAACGACTA---AAGGGGGTA 34480 Query 150578 CAAGAACTAAAAGAACGCG----ATG---ATGTTATTCTGTTCATCGATGAAATCCATAC 150630 ||| | | || | | | | | |||||||| ||||| |||||| | || || Sbjct 34479 TT-GAAGGATACGATTGAGTCACAGGGAAAAGTTATTCTCTTCATTGATGAACTACACAC 34421 Query 150631 TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACC 150690 | | || |||||||| |||| | |||||| ||||| | || |||||||||| Sbjct 34420 ATTGGTTGGAGCTGGTGCATCTGGTGATGGTTCTATGGATGCGGCGAACTTGTTAAAACC 34361 Query 150691 TGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAA 150750 |||| | || ||||| | | | | ||||| || || ||||| |||||| Sbjct 34360 ATCTCTCGCACGTGGTGAGTTGCACTGCGTGGGTGCGACCACACTGGATGAGTATCGTCG 34301 Query 150751 ACACATTGAAAAAGATGCAGCACT 150774 ||| |||||||||||||| ||||| Sbjct 34300 ACATATTGAAAAAGATGCCGCACT 34277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147585709582862