Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq244 206 5e-48 >seq244 Length=386007 Score = 206 bits (228), Expect = 5e-48 Identities = 539/815 (66%), Gaps = 9/815 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | |||||||||||||| ||||| |||| |||||| || |||| Sbjct 101604 CTGGTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTC 101545 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| ||| || || || || || || ||| || ||| || |||||| Sbjct 101544 CATAAAGTCAAACGGATTCTTTGATTTGTAATGTCGT-TCGTTGCCAAGTGCGACCAGCA 101486 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | ||||| ||| | || |||||| ||| |||||| |||||| || || || Sbjct 101485 GTCGGTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAGTC 101426 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| || | || | || ||||| ||| |||| ||| || || | |||| Sbjct 101425 GCACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCT 101366 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | | || || || | |||||| | || || |||| | | ||| |||| Sbjct 101365 CATGGATTCGCTCCTTTGGCAGCTTGTTGACAATGTAGTTCTCATACAAGAGGCACGCAA 101306 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | |||| || || ||||| ||||||| ||||| ||| || || |||| Sbjct 101305 AGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCA 101246 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | || || |||||||| | ||| ||| |||||||||||||| || |||| Sbjct 101245 TCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCT 101186 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 |||| || ||||| || ||| | |||| |||| || || || |||||| Sbjct 101185 CCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTG---CGGATCCACC 101129 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC--CCGGAAGAG 48375 | |||||| || |||||||||| ||| ||||| ||||| ||||| | ||||| Sbjct 101128 GGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGAC 101069 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGA 48435 || | | || ||| ||| | | || ||| |||||| || |||| |||| || Sbjct 101068 GATCCTTCTCT-ACC-AAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGA 101011 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 |||||||||||| || ||||||||||||||||||||| | | ||| ||||||||| Sbjct 101010 GTGCACATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCAC 100951 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||||| ||| | || || ||||| || || || || ||||| ||||| Sbjct 100950 CTCTGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAA 100891 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 |||||||| || || | ||| || || || | | | || | |||| || | Sbjct 100890 CGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCAGTCCACCAT 100831 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 || |||||||| || | || ||||| ||||||| Sbjct 100830 ATCATTGCCCAGATCAATCTCCTCCACTGTCCAGA 100796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529085512960