Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq244 150 3e-31 >seq244 Length=386007 Score = 150 bits (166), Expect = 3e-31 Identities = 547/849 (64%), Gaps = 17/849 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||| |||||| |||| | | | | |||||| | || ||||||||||||| | Sbjct 100765 TGGCAGAAATACAAGGAGGCCGAGAGCAGTATCTGGACAGTGGAGGAGATTGATCTGGGC 100824 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 || || |||| | |||| | || | | | || | || || ||||| |||| Sbjct 100825 AATGATATGGTGGACTGGGAGAAGCTGAACGATGGGGAACGACACTTCATCAAGCACGTC 100884 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| || || ||| || || ||| ||||| || || | |||| Sbjct 100885 CTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCTGGAGAACTTGGCACAGCGCTTCATG 100944 Query 25660 AGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | || |||||| | | || || | || |||||||| |||||||| ||||| || || Sbjct 100945 ACAGAGGTGCAGGTGCCTGAAGTGCGC-TGCTTCTACGGGTTCCAGATCGCCATTGAGAA 101003 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAG 25778 ||||||||| ||| ||| | ||| ||| |||||||| || ||| | | |||| Sbjct 101004 TGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGTACATCACCGACTTGGTAGAGAA 101063 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 ||||| || | ||||||| || || | ||| ||| ||||||| |||||| Sbjct 101064 GGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGC 101123 Query 25839 CATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTG 25897 || ||||||| ||| | || || |||| | ||||| || || || || || | Sbjct 101124 GATCCGGTGGATCCGCAGTGCCGA---CT-CGTTCGCAGAGCGTCTCGTTGCATTCGCCG 101179 Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAG 25956 | |||||||| || || ||| || || || ||| || | |||||||| ||| || Sbjct 101180 CGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGC-GCACTGTTCTGGCTGAAGAAGCGT 101238 Query 25957 GGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCAC 26016 || |||||||| ||| || ||||||||||||| |||| |||||||| || Sbjct 101239 GGTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCAT 101298 Query 26017 AGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACC 26076 | || ||||| ||||| | || | | || | || |||| | | ||| || | Sbjct 101299 ACCGACTTTGCGTGCCTCTTGTATGAGAACTACATTGTCAACAAGC--TGCCAAAGGAGC 101356 Query 26077 G--TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNN 26134 | || | |||||| ||||| |||||||||||| ||||| Sbjct 101357 GAATCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGCGCGAGTTCATCTGCGATGCGC 101416 Query 26135 NNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCA-ATACATTGAGTATGT 26192 | || |||||| | || |||||| || | ||||||||| | || Sbjct 101417 TTCCAGTGCGACTGATCGGGATGAAC-TCGGATCTCATG-GCAACATACATTGAATTCGT 101474 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTT 26252 ||| |||| |||||| | || || || ||| |||| | || ||||| Sbjct 101475 GGCGGACCGACTGCTGGTCGCACTTGGCAACGAACGACATTACAAATCAAAGAATCCGTT 101534 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGG 26312 ||||||||||| | || |||||| | || ||||| ||||||||||| |||| ||| || Sbjct 101535 TGACTTTATGGAGATGATTTCGTTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTTGG 101594 Query 26313 CGACTATCA 26321 || || || Sbjct 101595 TGAGTACCA 101603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841096231360