Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22 255 4e-62 seq133 224 6e-53 seq275 102 5e-16 seq258 95.1 8e-14 >seq22 Length=626277 Score = 255 bits (282), Expect = 4e-62 Identities = 881/1354 (65%), Gaps = 65/1354 (5%) Strand=Plus/Plus Query 591859 ATAAATATTTTCGGTAAATGGTTCAATACATTCATTATATCCTTTAATTTGAGATGTACT 591918 ||||||||| ||||| ||||||| ||| ||||||| || |||||||||||| Sbjct 346710 ATAAATATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGA 346769 Query 591919 TGCTGTTGGCATACATGTAGT--AGT-TAAACTGTTTCTAACACCATATATCATTATCTG 591975 ||| |||||||| || || || |||| ||||| | |||| | | | | Sbjct 346770 TGCAGTTGGCAT---TGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACG 346826 Query 591976 TTCCCGAAGAGTTTTCCAATCCCACATTCCACTTAATTTATCTTCACCAAGATTCCATAA 592035 |||| ||| | | ||| | |||| |||||| | | || ||| |||||| Sbjct 346827 TTCCTTAAGTGCATCCCAGTTCCACCGTCCACTGCGTGGTTTTTTACC------CCATAA 346880 Query 592036 ATCAAACTGGAATTTACCTTTTGAAAGTGGACTTCCCCAAAAGGTTTCATATGGACCAGA 592095 |||||| || ||| ||||| ||| ||||| || ||| |||||||||| || Sbjct 346881 ATCAAATTGTAATAAACCTTGAGAAGCAGGACTCCCTTGAAATCTTTCATATGGTCCTTC 346940 Query 592096 TTCTTTGGCCATTTGTAATGATTCTGTCATTGTTCCAAAATATATAGTTTCAAATATTTT 592155 ||||| || | | | || || || | |||| || || ||||| |||| Sbjct 346941 TTCTTCAGCAAGATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTC 347000 Query 592156 CCTATTAAGATCTCGAGCAATATCAGAATCAAATGGAATTTTAAATATAGCAAACACATC 592215 ||| | |||| ||| || | |||||||| | | | || | || | ||| Sbjct 347001 TTCATTTAAATCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATC 347060 Query 592216 GGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGCGTAAATTTGAAACACGTGTTTT 592275 || | |||||||||||||| || ||||||| || || | ||| | |||| || Sbjct 347061 TGCCATTCCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTG 347120 Query 592276 TTCTACTGGATAATAATTTACATCAATAATATTATTTAAATTTCTTGTAATAATTCTTGC 592335 | || ||||||||||| | |||||||| | || ||||||||||| | || | ||| Sbjct 347121 TGGTAACGGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGT 347180 Query 592336 GACCTTGTACAATTTATTATAATCAAACTCTGGAACACCGTTTTCATGAATAATAAATTT 592395 | | || | | | | |||||| |||| ||||| | | |||||| Sbjct 347181 TATTTCATATAGTCGTTGGTGATCAAA------AACATTTTTTTCCTCATCAATAAAACG 347234 Query 592396 AGGTAAACAAATTGATGACAAATTACAAACTGCATATTCATCTGCAGATGAGAATTCTAC 592455 ||||||| ||| || | | ||||| |||||| ||||||| ||||||| |||| | Sbjct 347235 AGGTAAAGCAATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAGATGAGTATTCCAT 347294 Query 592456 AATTTCACAACAAAGATTTGAGCCATTAATTACGCCTATATTAATCTGATTTGATTTTTG 592515 ||||| || | ||| || | || ||||| || || || |||| || ||||| | Sbjct 347295 GATTTCTGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTT 347354 Query 592516 ATTGATAGCATCTTTAAACAATATGTATGGTACACCTGTTTCAATTTGTGTTTCCATTAT 592575 ||| ||||||||| | | || | || || |||||||| ||||||| ||| | ||| Sbjct 347355 ATTACATGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTAT 347414 Query 592576 TTTAAACCATAAATCTCTTGCTTTGATTTGTTTTATAAATCTACCCTCATTTTCATA--T 592633 |||||| | |||| ||||| ||| ||||| | | || || |||||||| Sbjct 347415 AGCAAACCAAAGATCTTGTGCTTGAATTGTTTTTACACCACGTCCTTCCTTTTCATAACG 347474 Query 592634 TTAAGATAAGCTTTATTAAATTCTTCACCAT-ATTTTCCTACAATATCTGG-ACATTGTG 592691 || | |||| | ||||||||| ||||||| | || ||| |||| || | | Sbjct 347475 TTCATATAA--CTCATTAAATTCCTCACCATAACAGTCACTTAAT-CCTGGTGCAGTAT- 347530 Query 592692 ATGGACACATAAGTGACCAATTTTCATCTTTTTCAACACGATCCATGAAAATATTATTAA 592751 |||| |||||||| ||| || ||| |||||| ||||| ||||||| || || Sbjct 347531 TTGGATCCATAAGTGTCCACTTATCACGTTTTTCCACACGTTCCATGA-------ATAAA 347583 Query 592752 TCATTAATC--CAAGGAATAAA-----TCTCTGGCTCTTTCCGTTTCAGCACCAGTATTT 592804 ||| |||| || || ||||| || | || | || ||| |||||||| Sbjct 347584 TCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTC 347643 Query 592805 TTCTTTAGATCAAGGAAGAAAAATATATCACCATGCCAAGGTTCAATAAATACCGCAAAT 592864 |||||||| |||||| ||| ||||| |||||||||||||||| | | || ||||| Sbjct 347644 TTCTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAAC 347703 Query 592865 GAACCAGCTCTTTT---ACCACCTTGATTCGCATATCTGGCTATGTCATT--ATATATTG 592919 | ||| | ||| ||||||||||| |||| | ||| ||| ||| | | | Sbjct 347704 GCACCCTTGCGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGA 347763 Query 592920 ATAATACTCTCAA-TCCGTTAGATGTACCTTGAGTAGAACTAATATAAGCTCCTTCAACC 592978 | || ||| ||| || ||||| || | || ||||||| ||| || Sbjct 347764 AGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAG 347823 Query 592979 CGAACATTAGACATATTAATACCTATACCTCCCGCAAATTTACTAATAACAGCACAATCT 593038 |||| |||| | || || ||| ||||| || || | |||||| |||| |||||| | | Sbjct 347824 CGAATATTATGAACATGAACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGT 347883 Query 593039 TTCCAAGATTCACCT-AATGATGTCA----TATCATCTT---TTACACCCATTAAAAAAC 593090 || ||| | | | ||| ||| |||| |||| || || | | ||| | Sbjct 347884 TT--AAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATG 347941 Query 593091 AACTTGATAATTGTTCATAAGGAGTACCCGCATTAAATAAAGTTGGAGTTGCATGAGTAA 593150 |||| | |||| || || ||||| | |||||||| |||||||| ||||| |||| Sbjct 347942 AACT---CATTTGTGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAA 347998 Query 593151 AATATCCTTCTGATAACATT---TCATATGTTTC 593181 || |||| | || ||||| ||||||||||| Sbjct 347999 AAAATCC--CAGA-GACATTAAATCATATGTTTC 348029 >seq133 Length=495741 Score = 224 bits (248), Expect = 6e-53 Identities = 413/599 (69%), Gaps = 11/599 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| |||||||||||| | || || || || |||||| | ||| | | |||| | Sbjct 161132 TGCTATTGGTATTGATCTTGGCACAACCTATTCTTGTGTTGGTGTCTTCAAGAATGACCA 161073 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || || ||||| ||||| || | |||||||| |||||||| | ||||| Sbjct 161072 AGTGGAGATCATCGCTAATGATCAAGGAAACCGCACAACACCTTCATATGTGGCGTTTAC 161013 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | |||| |||| ||||| || || |||||| ||| ||||| || Sbjct 161012 AGAGACAGAGCGTCTTGTTGGTGATGCCGCAAAGAATCAAGTGGCAATGAATCCAACCAA 160953 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | |||||||| ||| | |||||||||| || ||||||||| | | | || || Sbjct 160952 CACAGTCTTTGATGCGAAACGTATGATTGGTCGCAAGTTTGATGATCCTGATTTGCAGTC 160893 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA--TATATAGAA 474625 ||||||| || ||||| |||||||| | | | | ||| || ||| || || Sbjct 160892 TGATATGAAGCACTGGCCCTTTAAGGTTACAGTTCGAGATGGAAAGCCAGTGGTACAGGT 160833 Query 474626 GCAATA-CACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | || || ||| || || || ||| | ||| || || |||| | | |||||| Sbjct 160832 GGAGTATCA---AGGCGAGACCAAGACATTCTTC-CCAGAGGAAATCAGTGCGATGGTTC 160777 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | | |||||||| ||| || ||||| |||| | | |||| | || || Sbjct 160776 TGGGAAAAATGAAGGAAATAGCAGAAGCATATATTGGTCTACCCGTAAAGAAGGCGGTGG 160717 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || ||||| ||||| ||||||||||| || || || || || || ||||| || | Sbjct 160716 TGACAGTTCCCGCATACTTTAATGATTCGCAGCGACAGGCTACAAAGGATGCTGGTGCTA 160657 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||| | |||| ||||||||||||||||| |||||||| || || |||| || | Sbjct 160656 TTGCTGGTTTGGATGTGTTACGTATTATTAATGAGCCAACAGCTGCTGCCATTGCCTACG 160597 Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAA---TGTTTTAATCTTTGATTGTGGAGGT 474919 || | |||||||| | || || | || ||| || | ||||||||| ||| ||| Sbjct 160596 GTATGGATAAGAAAACAGATAAGGGAGAAAAGGTGGTCCTTATCTTTGATCTTGGTGGT 160538 >seq275 Length=1012172 Score = 102 bits (112), Expect = 5e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| ||||| || |||||||||||||||||| | ||||| | |||||||||| Sbjct 608615 GATTTTTCTTCTCCTAACATTGCAAAGGAAATGCATGTGGGACATCTCCGATCTACAATT 608674 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 ||||||||| || || || | | | ||||| ||| | ||| || || | || ||| Sbjct 608675 ATTGGTGAAGCTATTAGTCGCCTTTTTGAATACTGTCAGTTTGATGTTCATCGCATCAAT 608734 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATT 817258 || | ||||||||||| || ||||| ||| | ||| Sbjct 608735 CACGTGGGTGATTGGGGTACTGCCTTTGGAATGCTTATT 608773 >seq258 Length=245094 Score = 95.1 bits (104), Expect = 8e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 318641 TAATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCATTTCTTACAGTAC 318700 |||| |||| |||||||| | | |||||| | || | ||| ||||| | || |||| Sbjct 204809 TAAT-CCATCTTCACCATACATAAGTTGAATAAGTTCTTGATTGGCATTACGAACTGTAC 204751 Query 318701 CATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTG 318760 |||||||| | | | || |||||| | | ||||| | ||| | |||| |||||| | Sbjct 204750 CATCATATGCGGCATGAACATCTTCCAATGCTTTAATAAGTTTACGCTGTAGATAACCAG 204691 Query 318761 TGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAA 318820 | |||| || || | ||| |||| ||||| ||||| | ||||||||| ||||| | Sbjct 204690 TATCTGATGTCTTCACAGCTGTATCAATAAGTCCTTCACGTCCTGCCATGGTATGGAAGA 204631 Query 318821 AGAATTC 318827 | ||||| Sbjct 204630 AAAATTC 204624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165516542212