Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq22 158 6e-34 >seq22 Length=626277 Score = 158 bits (174), Expect = 6e-34 Identities = 299/437 (68%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 ||||| |||||||| |||||||||| |||||||| | || | || | |||||| Sbjct 347572 TCCATGAATAAATCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCT 347631 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 ||||| |||||| ||||| | ||| | |||||||||| ||||| ||||| | | Sbjct 347632 TTTCCAGTATTCTTCTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGA 347691 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || | |||||| ||| || | ||| || |||||||||||||| || | || || | | Sbjct 347692 TAAACAGCAAACGCACCCTTGCGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTA 347751 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 || | || | ||| || || | |||| |||| ||| || || | ||| | Sbjct 347752 TTCCACACACGAAGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAA 347811 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT--TGA-A 26227 ||| | || | ||||| ||| |||||| ||| || ||||||||| ||| ||| | Sbjct 347812 CTTCCAGCAGAGCGAATATTATGAACATGAACACCAATACCACCAGCCATTTTACTGATA 347871 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 ||| ||||| | | || |||||| ||||||| | || ||||| ||| |||| | Sbjct 347872 ATA---GCACACTGTTTAAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCATTGCA 347928 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | | ||||| ||| | ||| | | | ||| || || |||||||| || || || Sbjct 347929 ACAAGGAAACATGAACTCATTTGTGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTG 347988 Query 26348 GCATGAGTATAATATCC 26364 ||||| ||| || |||| Sbjct 347989 GCATGTGTAAAAAATCC 348005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039016227925