Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq133 114 1e-20 >seq133 Length=495741 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139874 TGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGAT 139933 |||||| |||| |||||| || ||||| || |||| | | ||| | || | || Sbjct 474703 TGCAGTAGCTTGATCTAAAAGTGATGCATTCGCTACATCCATTTTTGTTAAATCAATTAT 474644 Query 139934 GAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGG 139993 || || || |||| || | || |||| | ||| || ||||| ||||||||||| || Sbjct 474643 GACAGTCTGAAAATTTAAAAGAGACTCCAGACGTCCTTGTGATATTTCAGCTTGATAAGG 474584 Query 139994 AGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTATGACTGGGGGTGT 140053 |||||| | || ||||| | ||| || |||| || ||||| |||| ||||| || || Sbjct 474583 AGTGTAGGGAGTATACCATCCAGGGTTTTCAATAATATTTCGAAGTATTACTGGTGGAGT 474524 Query 140054 AATGGTTCCATAGTATCCTTGACCTATAAGACT 140086 ||||| ||||||||||||| || || | ||| Sbjct 474523 AATGGACTCATAGTATCCTTGTCCAATCATACT 474491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996091243880