Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq253 141 1e-28 seq197 141 1e-28 >seq253 Length=1126320 Score = 141 bits (156), Expect = 1e-28 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 47956 GTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCA 48015 || ||||| ||| | ||||||| || || || || || || ||||||||| | || || Sbjct 261884 GTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAGAATACCATTGCACGCG 261943 Query 48016 TACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACA 48075 |||| ||||| || ||||| |||||| | |||||| | | |||||||| || || Sbjct 261944 AACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGCGTAGAGTTTCGCCACG 262003 Query 48076 CCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTA 48135 | || || ||||||||||| ||||| |||||| ||| || ||| |||||||| Sbjct 262004 GCGTATGGGCTGCGTGGATAGAAGGGTGTCTTCTCTGACTGCGGCACCTCCTGCACCTTT 262063 Query 48136 CCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAA 48195 || || | || || ||| ||| || |||| ||| | | | |||| || | | Sbjct 262064 CCGTACAACTCGCTTGTGCTTGCCTGGTAGAAGCGACACGTCTTCTCCAAGCCATTCGCA 262123 Query 48196 CGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGC 48255 |||| || ||||| | |||| | || ||||| |||||||| || || |||||||| Sbjct 262124 CGGATGGCGTCAAGGATCTTCAGAGCACCAATGGCGTCTGTCTGCCCCGTGTACTCGGGT 262183 Query 48256 ATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 | || || || ||||| || || || || | || || || | ||| ||||| Sbjct 262184 GTGTCGAAGGAGACCTTCACGTGTGATTGGGCGGCGAGGTTGTACACCTCGTCTGG 262239 Score = 141 bits (156), Expect = 1e-28 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 47956 GTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCA 48015 || ||||| ||| | ||||||| || || || || || || ||||||||| | || || Sbjct 266362 GTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAGAATACCATTGCACGCG 266421 Query 48016 TACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACA 48075 |||| ||||| || ||||| |||||| | |||||| | | |||||||| || || Sbjct 266422 AACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGCGTAGAGTTTCGCCACG 266481 Query 48076 CCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTA 48135 | || || ||||||||||| ||||| |||||| ||| || ||| |||||||| Sbjct 266482 GCGTATGGGCTGCGTGGATAGAAGGGTGTCTTCTCTGACTGCGGCACCTCCTGCACCTTT 266541 Query 48136 CCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAA 48195 || || | || || ||| ||| || |||| ||| | | | |||| || | | Sbjct 266542 CCGTACAACTCGCTTGTGCTTGCCTGGTAGAAGCGACACGTCTTCTCCAAGCCATTCGCA 266601 Query 48196 CGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGC 48255 |||| || ||||| | |||| | || ||||| |||||||| || || |||||||| Sbjct 266602 CGGATGGCGTCAAGGATCTTCAGAGCACCAATGGCGTCTGTCTGCCCCGTGTACTCGGGT 266661 Query 48256 ATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 | || || || ||||| || || || || | || || || | ||| ||||| Sbjct 266662 GTGTCGAAGGAGACCTTCACGTGTGATTGGGCGGCGAGGTTGTACACCTCGTCTGG 266717 >seq197 Length=1752 Score = 141 bits (156), Expect = 1e-28 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 47956 GTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCA 48015 || ||||| ||| | ||||||| || || || || || || ||||||||| | || || Sbjct 817 GTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAGAATACCATTGCACGCG 758 Query 48016 TACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACA 48075 |||| ||||| || ||||| |||||| | |||||| | | |||||||| || || Sbjct 757 AACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGCGTAGAGTTTCGCCACG 698 Query 48076 CCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTA 48135 | || || ||||||||||| ||||| |||||| ||| || ||| |||||||| Sbjct 697 GCGTATGGGCTGCGTGGATAGAAGGGTGTCTTCTCTGACTGCGGCACCTCCTGCACCTTT 638 Query 48136 CCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAA 48195 || || | || || ||| ||| || |||| ||| | | | |||| || | | Sbjct 637 CCGTACAACTCGCTTGTGCTTGCCTGGTAGAAGCGACACGTCTTCTCCAAGCCATTCGCA 578 Query 48196 CGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGC 48255 |||| || ||||| | |||| | || ||||| |||||||| || || |||||||| Sbjct 577 CGGATGGCGTCAAGGATCTTCAGAGCACCAATGGCGTCTGTCTGCCCCGTGTACTCGGGT 518 Query 48256 ATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 | || || || ||||| || || || || | || || || | ||| ||||| Sbjct 517 GTGTCGAAGGAGACCTTCACGTGTGATTGGGCGGCGAGGTTGTACACCTCGTCTGG 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665491746341080