Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq244 125 9e-24 >seq244 Length=386007 Score = 125 bits (138), Expect = 9e-24 Identities = 353/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| ||| | |||||||| ||||||||||| | ||||| || ||| | | Sbjct 101080 GCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGC 101139 Query 65056 ACAAAGTCTCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || || ||| ||||| ||||| || |||| || || ||||||||||| || Sbjct 101140 A----GTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATT 101195 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || ||||||||||| | | ||| |||||||||| ||||| ||||| || || Sbjct 101196 CTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACT 101255 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||| || || || || || || ||||||||||| || || |||| |||| Sbjct 101256 GACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTG-CGTG-- 101312 Query 65235 GCTCTT-CAAGA-CTTTGCGTAATAGACCCACTACC----GAAACTATCCACGCCATCGT 65288 ||||| | || | | | | || || || || ||||| | ||| | Sbjct 101313 CCTCTTGTATGAGAACTACATTGTCAACAAGCTGCCAAAGGAGCGAATCCATGAGATCAT 101372 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCA-TGTAATCTCA 65347 |||||||| ||||| ||| | |||||||| || || || ||| || | || | Sbjct 101373 CCTCGAGGCGGTGGAGATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGTGCGA-CTGA 101431 Query 65348 TCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCA 65407 |||| |||||||| || ||| | |||||||| | ||| |||| || || || Sbjct 101432 TCGGGATGAACTCGGATCTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGG 101491 Query 65408 AACAAGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | |||| || || || | |||||||| |||||||||||||| | | Sbjct 101492 TCGCACTTGGCAACGAACGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGA 101551 Query 65468 TTAGCCTTG-ATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || | ||| | || ||||| ||||||||||||||| ||||| || || Sbjct 101552 TT-TCGTTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTTGGTGAGTA 101600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567221178720