Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq244 125 9e-24
>seq244
Length=386007
Score = 125 bits (138), Expect = 9e-24
Identities = 353/530 (67%), Gaps = 18/530 (3%)
Strand=Plus/Plus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|||||| ||| | |||||||| ||||||||||| | ||||| || ||| | |
Sbjct 101080 GCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGC 101139
Query 65056 ACAAAGTCTCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114
| || || ||| ||||| ||||| || |||| || || ||||||||||| ||
Sbjct 101140 A----GTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATT 101195
Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174
|||||| || ||||||||||| | | ||| |||||||||| ||||| ||||| || ||
Sbjct 101196 CTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACT 101255
Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234
||| || || || || || || ||||||||||| || || |||| ||||
Sbjct 101256 GACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTG-CGTG-- 101312
Query 65235 GCTCTT-CAAGA-CTTTGCGTAATAGACCCACTACC----GAAACTATCCACGCCATCGT 65288
||||| | || | | | | || || || || ||||| | ||| |
Sbjct 101313 CCTCTTGTATGAGAACTACATTGTCAACAAGCTGCCAAAGGAGCGAATCCATGAGATCAT 101372
Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCA-TGTAATCTCA 65347
|||||||| ||||| ||| | |||||||| || || || ||| || | || |
Sbjct 101373 CCTCGAGGCGGTGGAGATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGTGCGA-CTGA 101431
Query 65348 TCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCA 65407
|||| |||||||| || ||| | |||||||| | ||| |||| || || ||
Sbjct 101432 TCGGGATGAACTCGGATCTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGG 101491
Query 65408 AACAAGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467
| |||| || || || | |||||||| |||||||||||||| | |
Sbjct 101492 TCGCACTTGGCAACGAACGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGA 101551
Query 65468 TTAGCCTTG-ATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
|| | ||| | || ||||| ||||||||||||||| ||||| || ||
Sbjct 101552 TT-TCGTTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTTGGTGAGTA 101600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596567221178720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |