Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22 201 3e-46 seq111 89.7 2e-12 >seq22 Length=626277 Score = 201 bits (222), Expect = 3e-46 Identities = 816/1261 (65%), Gaps = 55/1261 (4%) Strand=Plus/Plus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||||| || || |||||||||||||||| || | || ||| | |||||||| | Sbjct 346965 TTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTCTTCATTTAAATCTTTAGCCTTA-C 347023 Query 155372 AGAT-GTAAATGCGATATC----CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCA 155426 | | ||||||| || || ||| |||| || || || | || || || ||| Sbjct 347024 TGCTAGTAAATG-GAAGTCTTAGCATTGTGAATAAA---TCTGCCATTCCTTGTACACCA 347079 Query 155427 ATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATT 155485 ||||||| || |||| | ||| || || || ||| | || || ||| |||| Sbjct 347080 ATACCGATAGGTCGATTACGCATATTACTGTCGCGTG-CTTGTGGTAACGGATAATAATT 347138 Query 155486 CACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCAC 155545 || |||||||| | || |||||| | || || || |||| || || | Sbjct 347139 CATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCATATAGTCGTTG 347198 Query 155546 ATAGTCAAATG---TTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATT 155602 | ||||| |||| ||||||| | ||| | | | ||||||| || || || Sbjct 347199 GTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGTAAAGCAATAGAAGCAAGGTT 347258 Query 155603 ACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAAC 155661 |||||| ||| | || | | | | | |||||| | || || ||| | ||||||| Sbjct 347259 ACATACTGCAATTTCATCTTTAGATGA-GTATTCCATGATTTCTGTGCATAAATTAGAAC 347317 Query 155662 TCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAA 155721 |||||| || | || |||||||| ||||| | ||||| ||||| || || || | Sbjct 347318 ACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAGAGCA 347377 Query 155722 TGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCAT 155781 | | || |||||| ||||| |||| || || || | ||| || || | || | Sbjct 347378 TAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAACCAAAGATCTTGTGCTT 347437 Query 155782 TAATTTGCTTGTTGTATCTG--CCTTCCGACTCATAT--TTCATATACAGCGTTCGGTAA 155837 |||| || || | | |||||| ||||| |||||||| | || | Sbjct 347438 GAATTG--TTTTTACACCACGTCCTTCCTTTTCATAACGTTCATATAACTCATTAAAT-- 347493 Query 155838 TCCTCACCGTAACAATCACTCAGTCCAGG-GCACTTATCGGGGCAAAACAGCGACCAAAT 155896 |||||||| ||||| ||||| | ||| || ||| | | || | | | || | ||| Sbjct 347494 TCCTCACCATAACAGTCACTTAATCCTGGTGCAGTATTTGGATCCATA-AGTGTCCAC-- 347550 Query 155897 TTTATTACCGATT---ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAG 155953 |||| || || ||||| ||||| |||| |||| ||| | ||||| || || Sbjct 347551 -TTATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAATCCACAGGGCATAAAAGAG 347609 Query 155954 GTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012 ||| | ||| | |||| || || | || ||||||| ||| | ||| | || Sbjct 347610 GTCACGTGCACGTTGA-TCTTCTTTTCCAGTATTCTTCTTTAGTAAGAGGAAGTTAAAAA 347668 Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---T 156069 |||| ||| || || ||||| | |||||| ||| || | || ||||| | Sbjct 347669 TATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCGTTTACCACCACCTT 347728 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 |||||||||| ||||| || ||||| | |||| ||||| || | || ||||| || | Sbjct 347729 GATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTACAAGTCCATTTGATG 347788 Query 156130 TGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAA 156189 | ||||| ||||| ||||| |||| ||||||| |||||||| ||| | |||| Sbjct 347789 TTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTATGAACATGAACACCAA 347848 Query 156190 TACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAA 156249 ||||||| | | |||| || ||| || | || | |||| |||| || |||| Sbjct 347849 TACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTATCATAAATTCCCTCAA 347908 Query 156250 TAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAG 156309 || ||| |||| ||||| | || | || ||||| | ||| || |||||| |||| Sbjct 347909 TACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGTGGGTATGGTGTACCAG 347968 Query 156310 CGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCT 156369 ||| |||| || || || ||||| ||||| | |||||| |||| ||||| | Sbjct 347969 AGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAATCCCAGAGACATTAAATCATATGTTT 348028 Query 156370 CC-TTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGC 156428 || ||| | | |||| || || ||||||| | || |||| | ||||||| Sbjct 348029 CCTTTACACGTTTCAA-ATCTTCTCCATGAATACCTAAAGCTACCCGAAGAAACATATGT 348087 Query 156429 TGAGGACGCTCTACAAT---CA---CTCC---------ATCAATTCGCAGAAGGTATGCG 156473 || |||||||||||||| || |||| |||| || || ||||| | Sbjct 348088 TGTGGACGCTCTACAATATCCATTTCTCCTCGTGCCCTTTCAACACGAAGTAGGTAAGAT 348147 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAATCATT 156533 | |||| |||| | | || ||| | ||||| | | |||||| | ||||||||| ||| Sbjct 348148 CTCTCCAAAGTTCTGTATCCAAAAAATTCAAAACGCATATCACGCTCGTAATCAATAATT 348207 Query 156534 T 156534 | Sbjct 348208 T 348208 >seq111 Length=1635300 Score = 89.7 bits (98), Expect = 2e-12 Identities = 218/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| |||||| || ||||||||| || | |||| ||||| || | || Sbjct 760671 CTTTTTCTACCAAAAGAATCAATTTCATCTACAAAAACAACACAAGGTTTACATTCATGA 760612 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | ||| | ||||| || | ||||||| |||||||| | |||| ||||| Sbjct 760611 GCTTGTTTAAAAAGTTCTCGAACTCTTTGAGCTCCAACTCCAACATAAACTTCTTCAAAT 760552 Query 289141 TCAGAAGCGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||| | | ||| | ||| | ||| | ||||| |||||||| || | || || Sbjct 760551 TCACTTCCAG-TACAACTAAGAAAAGGTACCATAGCTTCTCCTGCTACAGCTTTGGCAAG 760493 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | ||| ||||| ||||||||| || || | || || || || |||| ||| || || Sbjct 760492 TAATGTTTTACCAACTCCAGGTGGACCATCAAGAAGTACACCTTTAGGTAATTTAGCTCC 760433 Query 289260 AGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | |||| ||| |||| | |||||||| || | |||||| || ||||| || Sbjct 760432 AAGA-ACTTGATAACGAGCAGGATTTTTTAAAAAATCAATAATTTCAATAACTTCATGTT 760374 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 |||| || ||||||||||||| Sbjct 760373 TTGCTTCTGTTAATCCTGCTACATC 760349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811584405503