Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq244 165 1e-34 >seq244 Length=386007 Score = 165 bits (182), Expect = 1e-34 Identities = 223/311 (72%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||||| |||||||||||||| ||||| ||| | ||| || | ||| || Sbjct 101012 GAGTGCACATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGC 100953 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||| || |||| |||||| ||| || ||||| || || ||||| Sbjct 100952 ACCTCTGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAG 100893 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||||||||| ||||| || || | ||| | ||| | |||||| || Sbjct 100892 AACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCAGTCCACC 100833 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || || || || | |||||| | |||||||| | |||||||| ||||| Sbjct 100832 ATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATACTGCTCTCGGCCTCCTTGTAT 100773 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932 ||| ||| || | ||||| |||||| || | |||| |||||| ||||| |||||| Sbjct 100772 TTCTGCCAGACGTCGTGGTACTTGATAGGAAATAAGACATAGCGGTCTGGGTTCTCGCGC 100713 Query 869933 AACAGGGGTTC 869943 | ||| || || Sbjct 100712 AGCAGTGGCTC 100702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107113021366123