Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq244 113 4e-20 seq286 95.1 1e-14 >seq244 Length=386007 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || || ||||| |||||| || |||| |||| | | Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||||| | | || || |||||| ||||| || || | ||| ||||||| Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| ||||| ||||||||||| | | | || ||||||| |||||| Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || ||| ||||| ||||| Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTG 42343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 ||||||||| | ||||| | ||| ||||| ||||||||||| | | | || ||||||| Sbjct 41418 GGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 41477 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || || ||| ||||| ||||| Sbjct 41478 CTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTG 41514 >seq286 Length=961496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 ||||||||| | ||||||| ||| ||||| ||||||||||| | | | || ||||||| Sbjct 812731 GGATCAACAGCGTCTTATTTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 812672 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || |||||| ||||| ||||| Sbjct 812671 CTACAACATTCAGAAGGAGTCTACGCTGCACTTGGTG 812635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839994949267