Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq244 138 2e-26 >seq244 Length=386007 Score = 138 bits (152), Expect = 2e-26 Identities = 215/306 (70%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||||| || || |||||||| || || |||||||| ||||| || | || ||| Sbjct 101270 TCGTTGCTGAACGTCAGTCCGGGCATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAG 101211 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 || ||| ||||| || || ||||| || ||||| || | ||||| ||||| || || Sbjct 101210 AATGAGCCAGAGAAGAATATACCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAAC 101151 Query 794482 GTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAG 794541 | ||| ||| || | ||||||| ||||||||||| ||||| ||| | | Sbjct 101150 GAGTC--GGCACT----GCGGATCCACCGGATCGCCCACTCCGCCTTCTTCTGGATACAT 101097 Query 794542 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTG 794601 || | ||| |||||| | | || | |||||||| ||| ||| ||| ||| || Sbjct 101096 GGAATCGTTGAGATGGCATGCAGAAGACGATCCTTCTCTACCAAGTCGGTGATGTACGTA 101037 Query 794602 TCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAA 794661 || | || | ||||| ||||| ||||| | || || |||||||||||||| || || Sbjct 101036 TCCAGCAGCACTGAGTACGTCTCGGAGTGCACATTCTCAATGGCGATCTGGAACCCGTAG 100977 Query 794662 AAGCAG 794667 |||||| Sbjct 100976 AAGCAG 100971 Score = 116 bits (128), Expect = 6e-20 Identities = 186/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 796153 TCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCG 796212 || || || || ||||| |||||||||| |||| |||||| ||| || ||||| Sbjct 100964 TCAGGCACCTGCACCTCTGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCA 100905 Query 796213 CTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG 796272 || || ||||| || || |||||||||||||| ||||| || || | ||| | ||| Sbjct 100904 CTCGCAGCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTC 100845 Query 796273 ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCG 796332 |||||| ||| | || ||| || || | |||||| | ||||| | | |||| Sbjct 100844 TCCCAGTCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATACTGCTCTCG 100785 Query 796333 GCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAAAGCGAT 796390 |||| ||||| ||| ||| | ||| ||||| ||| || || | ||| |||| | Sbjct 100784 GCCTCCTTGTATTTCTGCCAGA--CGTCGTGGTACTTGATAGGAAATAAGACATAGCGGT 100727 Query 796391 TGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||||||||||| ||||| ||||| Sbjct 100726 CTGGGTTCTCGCGCAGCAGTGGCTC 100702 Score = 102 bits (112), Expect = 1e-15 Identities = 224/328 (68%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||||||||| ||||| || || | ||| || ||||| |||||||||| | | Sbjct 101615 ACGCCCGCCTTCTGGTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAAC 101556 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 || |||| |||||| | ||||| || | ||| || ||| || || Sbjct 101555 GAAATCATCTCCATAAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGCCAAGT 101496 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA-CTGGCACATGAGGGCGGCGTTCAT 794071 | | ||||| ||||| || |||||||||||||| | || |||||| | | |||||| Sbjct 101495 GCGACCAGCAGTCGGTCCGCCACGAATTCAATGTATGTTGC-CATGAGATCCGAGTTCAT 101437 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || ||| || |||| |||| || ||||| ||||||||| || ||||| Sbjct 101436 CCCGATCAGTCGCACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTC 101377 Query 794132 GATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGA-GCA--TCGTGTAGA 794187 || |||||||| | ||| || || | | |||||| ||| | | | || || | Sbjct 101376 GAGGATGATCT-CATGGATTCGCTCCTTTGGCAGCTTGTTGACAATGTAGTTCTCATACA 101318 Query 794188 GCAGGCAGGCAAAGTCGCAATGCAGACC 794215 ||||| ||||||||| ||||||||| Sbjct 101317 AGAGGCACGCAAAGTCGGTATGCAGACC 101290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916212466515041