Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq244 111 1e-19 >seq244 Length=386007 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||||||||| ||||||| ||| |||| | || Sbjct 42345 AGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCC 42286 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| || || || || || | || | ||||||||||| Sbjct 42285 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCC 42226 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| || || || || | | || ||||||| || || | || |||| Sbjct 42225 TGAATCTTTGCCTTCAC--ATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGG 42168 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||| || || | |||||||| ||||||||||| || Sbjct 42167 TCTTGCCTGTCAATGTCTTTACGAAGATCTGCATAAT 42131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691533767461