Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq244 136 3e-27
seq286 104 2e-17
>seq244
Length=386007
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || || || || |||||||| |||||| || |||| |||||| ||
Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| ||||| | | || || ||||||| || || || || | ||| ||||||
Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | ||||| | ||| ||||| ||||||||||| | | || ||||||||||||||
Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| ||| ||||| |||||
Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTG 42343
Score = 95.1 bits (104), Expect = 1e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
|||||| ||| | ||||| | ||| ||||| ||||||||||| | | || |||||||
Sbjct 41418 GGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 41477
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||||||||| |||||||| ||| ||||| |||||
Sbjct 41478 CTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTG 41514
>seq286
Length=961496
Score = 104 bits (114), Expect = 2e-17
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
|||||| ||| | ||||||| ||| ||||| ||||||||||| | | || |||||||
Sbjct 812731 GGATCAACAGCGTCTTATTTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 812672
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||||||||| |||||||||||| ||||| |||||
Sbjct 812671 CTACAACATTCAGAAGGAGTCTACGCTGCACTTGGTG 812635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398875249241791
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |