Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq244 136 3e-27 seq286 104 2e-17 >seq244 Length=386007 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || |||||||| |||||| || |||| |||||| || Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||||| | | || || ||||||| || || || || | ||| |||||| Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| ||||||||||| | | || |||||||||||||| Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| ||| ||||| ||||| Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTG 42343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||| ||| | ||||| | ||| ||||| ||||||||||| | | || ||||||| Sbjct 41418 GGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 41477 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||| |||||||| ||| ||||| ||||| Sbjct 41478 CTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTG 41514 >seq286 Length=961496 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||| ||| | ||||||| ||| ||||| ||||||||||| | | || ||||||| Sbjct 812731 GGATCAACAGCGTCTTATTTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGA 812672 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||| |||||||||||| ||||| ||||| Sbjct 812671 CTACAACATTCAGAAGGAGTCTACGCTGCACTTGGTG 812635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875249241791