Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq166 89.7 7e-13 >seq166 Length=457962 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 162997 TATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGA 163056 ||||||||| | ||| | ||| || ||| | ||||| | | ||| | || || || Sbjct 232555 TATTAAGGTGGTACAACTTGCTGGTTACGTTTCTGAACATGCCGCTTATCATCATGGAGA 232496 Query 163057 ACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 163116 |||| ||| |||||||| | || || ||||||| ||| || |||||||| | Sbjct 232495 ACAATCATTAGTACAAACTATAGTAGGATTAGCACAAGATTATGTGGGATCAAATAATTT 232436 Query 163117 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 163176 | || || | ||| ||||||||||||||||| | || |||||||||||||| ||| Sbjct 232435 ACCACTATTACAACAAGATGGTCAATTTGGTACACGTTTGCAAGGAGGTAAAGATCATGC 232376 Query 163177 GGCA 163180 ||| Sbjct 232375 CGCA 232372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635175067229320