Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq166 96.9 5e-15 >seq166 Length=457962 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 172885 TATTAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGA 172944 ||||||||| | || | ||||||| || | ||||| | | |||| | ||||| || Sbjct 232555 TATTAAGGTGGTACAACTTGCTGGTTACGTTTCTGAACATGCCGCTTATCATCATGGAGA 232496 Query 172945 ACAAAACCTTTGTG-AAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACA 173003 |||| | || || |||||||| || ||| ||||| |||| ||| || ||||||| Sbjct 232495 ACAAT-CATTAGTACAAACTATAGTAGGATTAGCACAAGATTATGTGGGATCAAATAATT 232437 Query 173004 TAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAG 173063 || || || | ||| ||||||||| |||||||| | | |||||||||||||| | Sbjct 232436 TACCACTATTACAACAAGATGGTCAATTTGGTACACGTTTGCAAGGAGGTAAAGATCATG 232377 Query 173064 CCGCA 173068 ||||| Sbjct 232376 CCGCA 232372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655277387071000