Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq166 96.9 4e-15 >seq166 Length=457962 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 165159 TATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGA 165218 |||||| || | ||| | ||| || ||| | ||||| | | |||| | ||||| || Sbjct 232555 TATTAAGGTGGTACAACTTGCTGGTTACGTTTCTGAACATGCCGCTTATCATCATGGAGA 232496 Query 165219 ACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 |||| ||| |||||||| | || || ||||||| ||| || |||||||| | Sbjct 232495 ACAATCATTAGTACAAACTATAGTAGGATTAGCACAAGATTATGTGGGATCAAATAATTT 232436 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 | || || | ||| ||||||||||||||||| | || |||||||||||||| ||| Sbjct 232435 ACCACTATTACAACAAGATGGTCAATTTGGTACACGTTTGCAAGGAGGTAAAGATCATGC 232376 Query 165339 GGCATCAAGATATATTTATACCAAACCACAT-AAAATATTAAAATATATATTTA 165391 ||| | ||||| | ||| || || | ||||||| || || |||||| Sbjct 232375 CGCAGGTCGTTATATCTTTAC---ACGACTTGCAAATATTGCAAGATTTATTTA 232325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528693731840