Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq133 374 6e-98 seq222 161 7e-34 seq275 113 3e-19 seq66 98.7 7e-15 seq258 95.1 9e-14 seq166 89.7 4e-12 >seq133 Length=495741 Score = 374 bits (414), Expect = 6e-98 Identities = 878/1308 (67%), Gaps = 33/1308 (3%) Strand=Plus/Plus Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 281649 |||||||| | || || | |||| |||| ||||||| | ||| | || | ||| | Sbjct 159840 TGATTATCAGCATTGGTAGAGAATA-TCTGCGATTTTTGAATAGGCACAGTAGAGTTACG 159898 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 | ||||| | | ||||| || ||||| ||||| | ||||||||||||||| || || Sbjct 159899 AGGAATAAGAACAGACATAACTCCTCCAGCAGTTTCCACACCAAGAGAAAGAGGTGTTAC 159958 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||| | || | || || | |||||| | | |||| |||||| ||| || Sbjct 159959 ATCCAGTAACAGAAGTCCTTCAGTCTTTTCAGAACGTCCACCAGAGAGAATATGTGCCTG 160018 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 281829 | || |||||||| || ||||| ||||||||||||| || ||| ||| |||||| Sbjct 160019 TACGGCGGCACCATAAGCCACAGCCTCATCAGGATTAATAGAACGATTGGGTTCTTTACC 160078 Query 281830 ATTGAAAAAATTTGAAAGAAGTTGTCT--TACCTTAGGAATACGAGATGATCCTCCAACT 281887 || || || || || |||| ||| | |||||||||| ||||| ||||| Sbjct 160079 TCCAAAGAAGTTCTGAACAATTTGTTGAATACGT--GGAATACGAGTGGATCCACCAACC 160136 Query 281888 AATACAATTTCATGCACCT---GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCA 281944 || || | || || || | ||| || ||| |||||| ||||| |||| Sbjct 160137 AACACCACATCGTGAACATCACGTGCTT---CCATACCCGAATCCTGCAAAACCTTTTTC 160193 Query 281945 ACGGGTTCAAGACCA-GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 282003 || |||||||| | | |||| || | || ||| | |||||| || ||| | || Sbjct 160194 ACTGGTTCAAGGCAACGCTCAAATTGA-TCACGACACATTTCTTCAAAACGAGCACGTGT 160252 Query 282004 AAGAGT-GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG 282062 || | || | | | ||| ||| || | || | ||||| ||| | |||| | Sbjct 160253 AATCTTTGAGAAGAGA-TCACATCCATCATATAAGGCATCAATTTCCACAGTAGCAT--- 160308 Query 282063 TCGAAGAA---GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 282119 | |||||| || |||| || || |||| |||||||| || | || | ||| | | Sbjct 160309 TGGAAGAACTGGAGAGTGTTCGCTTCACACGCTCACATGCCGTTCGCAGACGTCGCACAG 160368 Query 282120 CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG 282179 || ||| | | | |||| || | | | |||| || || | | | | Sbjct 160369 CTCGTGCATTTCCACGTACATCTTTTCCAAAACGTGTCTTAAACTCCGTAGCGAAGTAAT 160428 Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 ||||| |||||||||||||||||||| ||||| | |||| ||| | ||| || | | Sbjct 160429 CCACAAGGCGATTATCAAAATCTTCACCACCCAAGTGGGTATCTCCCGCCGTTGCCTTCA 160488 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 ||| |||| ||| | |||| || | | ||| |||||| ||| |||||||| | || Sbjct 160489 CTTCAAAAATACCACCATCAATAGTGAGTAAAGTTACATCAAAGGTACCACCACCAAGAT 160548 Query 282300 CAAAAATAAGTACATTCATTTCT---TTGTCTTGGTTTTTATCAAGACCATACGCAAAAG 282356 |||| ||||| || | ||||| || ||| || ||||| | ||| || |||| | Sbjct 160549 CAAAGATAAGGACCACCTTTTCTCCCTTATCTGTTTTCTTATCCATACCGTAGGCAATGG 160608 Query 282357 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 282416 ||||||| ||||| ||||||||||| | || |||| | ||||||||| || |||| Sbjct 160609 CAGCAGCTGTTGGCTCATTAATAATACGTAACACATCCAAACCAGCAATAGCACCAGCAT 160668 Query 282417 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTG 282476 | || || || |||| || ||||| ||||| ||||| ||||| || | || || | Sbjct 160669 CCTTTGTAGCCTGTCGCTGCGAATCATTAAAGTATGCGGGAACTGTCACCACCGCCTTCT 160728 Query 282477 TTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATG 282536 |||| | |||||||| || |||| ||| |||||||| | | || ||| | Sbjct 160729 TTACGGGTAGACCAATATATGCTTCTGCTATTTCCTTCATTTTTCCCAGAACCATCGCAC 160788 Query 282537 AAATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGT 282595 |||| ||||| ||| | || ||||| || |||||| || | | ||| Sbjct 160789 TGATTTCCTCTGG-GAAGAATGTCTTGGTCTCGCCTTGATACTCCACCTGTACCACTGGC 160847 Query 282596 TT---ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT 282652 || || | ||| |||| ||||| ||||| | |||||||| || || | | Sbjct 160848 TTTCCATCTCGAAC---TGTAACCTTAAAGGGCCAGTGCTTCATATCAGACTGCAAATCA 160904 Query 282653 TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTA 282712 | |||| ||| | | |||||| | ||||| |||||||| | || ||||||||||| Sbjct 160905 GGATCATCAAACTTGCGACCAATCATACGTTTCGCATCAAAGACTGTGTTGGTTGGATTC 160964 Query 282713 ACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACA 282772 | ||| |||||| || || ||||| |||| ||| | |||||||||||||| | ||| Sbjct 160965 ATTGCCACTTGATTCTTTGCGGCATCACCAACAAGACGCTCTGTCTCTGTAAACGCCACA 161024 Query 282773 TATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGC 282832 ||||| || |||||||| || ||||||||||| || || || || |||| |||| | Sbjct 161025 TATGAAGGTGTTGTGCGGTTTCCTTGATCATTAGCGATGATCTCCACTTGGTCATTCTTG 161084 Query 282833 CATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||||| |||||| | | ||||| || | |||||||||||||||| Sbjct 161085 AAGACACCAACACAAGAATAGGTTGTGCCAAGATCAATACCAATAGCA 161132 >seq222 Length=1158363 Score = 161 bits (178), Expect = 7e-34 Identities = 395/591 (67%), Gaps = 12/591 (2%) Strand=Plus/Minus Query 892204 ATATTAGAAATTTTGATCTCATTATGCACACATTGACTGAGCATGAAATTGATACTATTG 892263 || ||| |||| |||||| |||||||| ||| | | |||| |||||||| ||| Sbjct 145701 ATCTTACCAATTCTGATCTTATTATGCATTTATTAGATCATTATGATATTGATACAATTA 145642 Query 892264 TGCATTTTGCTGCTCATTCTCATGTCGATAATTCCTTTAAAAATTCTCTTGCTTTTACTG 892323 | ||||||| || || |||||| ||||| ||| ||| |||| | ||||| Sbjct 145641 TTAATTTTGCAGCGCAGAGTCATGTAGATAACAGTTTTGGTAATAGTCTTTCCTTTACAC 145582 Query 892324 AAACAAATGTTTTTGGAACCCATGTTTTACTAGAATGTTCTCGAATGTATGGCAAACTAA 892383 | | ||||| |||||||| ||||| | |||| ||| | ||| ||||| | || Sbjct 145581 ATAATAATGTATTTGGAACACATGTCCTTTTAGAGTGTGCGAGAACATATGGACGAGTAG 145522 Query 892384 AATTATTTTTCCATATGAGTACTGATGAAGTTTATGGTGAAATCGATACTACGGATACTA 892443 | ||| | ||| |||| || |||||||| ||||| || | |||||| ||| Sbjct 145521 AGAAGTTTATACATGTGAGCACAGATGAAGTGTATGGACAAGTA------ACGGATTCTA 145468 Query 892444 GTCGTGAAGTTTCTTTATTGTGTCCTACAAATCCTTATGCTGCAACAAAAGCTGGTGCAG 892503 |||| ||| ||| |||||||| || || || |||||||||| | || Sbjct 145467 AAAAGGAAGAGGGAACATTAAATCCAACAAATCCCTACGCCGCTACAAAAGCTGCAGTAG 145408 Query 892504 AACACATCGTAAAATCATATTTTTTGTCGTATAAATTACCTATTATTATTGCTCGATGTA 892563 | | || |||||||||||| | | || | | | | || ||||||| ||||| | | Sbjct 145407 AGTATATTGTAAAATCATATCATATTTCTTTTGGACTTCCATGTATTATTACTCGAGGGA 145348 Query 892564 ATAATGTCTATGGTCGTAATCAATATCCTGAAAAACTTATTCCTAAATTTATT-TGTAGT 892622 ||||||| ||||| | | |||||||||| || ||| | ||||| ||||||| || | Sbjct 145347 ATAATGTATATGGACCTTATCAATATCCAGAGAAATTGATTCCACGATTTATTATGCTGA 145288 Query 892623 TTACTTGATGGTAAAAAATTACATATTCAAGGAACTGGTAATTCAAGGAGAAATTTTATT 892682 | | | | || | ||||| || | |||| |||| ||||| | | ||| ||||| Sbjct 145287 TGAATGCAGGGAAGAAAATGAC-TGTTCAGGGAAATGGTAGTAATAAACGAACCTTTATA 145229 Query 892683 CACGCTATTGATGTCG-CTGATGCTGTAGATCTTGTTATTAATAATGGTGTTATTGGTGA 892741 || || | |||||| | | || || || | ||||||| ||| |||||| || Sbjct 145228 CATGCCAGTGATGTGGCCAGAGCCTTTA-TTACAATTATTAACCGTGGATATATTGGGGA 145170 Query 892742 AACTTATAATATTGGAGTAACA-AATGAACACAGTGTACTAGATGTGGCTC 892791 |||||||||||| | || ||||| ||||| | |||||||||| Sbjct 145169 TGTGTATAATATTGGA-TCTCATGATGAAGTGAGTGTGATGGATGTGGCTC 145120 >seq275 Length=1012172 Score = 113 bits (124), Expect = 3e-19 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 637124 TTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAA 637183 |||| |||| ||||||||| || ||||| || ||||||||| | |||||| | |||| | Sbjct 608610 TTGTGGATTTTTCTTCTCCTAACATTGCAAAGGAAATGCATGTGGGACATCTCCGATCTA 608669 Query 637184 CTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTA 637243 | |||||||||||| ||||| || | | || ||| ||| |||||| |||| | Sbjct 608670 CAATTATTGGTGAAGCTATTAGTCGCCTTTTTGAATACTGTCAGTTTGATGTTCATCGCA 608729 Query 637244 TTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATA 637294 | ||||| |||||||||||||| ||| || || ||| | ||| ||||| Sbjct 608730 TCAATCACGTGGGTGATTGGGGTACTGCCTTTGGAATGCTTATT--TTATA 608778 >seq66 Length=549782 Score = 98.7 bits (108), Expect = 7e-15 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242 || || || || ||||| ||||| ||||||||||| |||||| | ||||||||||| | Sbjct 312027 GCTACTATTGCTTTTGGAATGGGAATTAATAAACCAGATGTTCGTTTTGTTATTCATG-C 312085 Query 131243 GGAGCTCCCAAGAA-TATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 | | | || | | ||||||||| ||||||||||||| ||| |||| ||||||||||| Sbjct 312086 AGCGATGCCTAAATCTATTGAAGGGTATTATCAAGAAAGTGGACGAGCTGGTCGTGATGG 312145 Query 131302 A 131302 | Sbjct 312146 A 312146 >seq258 Length=245094 Score = 95.1 bits (104), Expect = 9e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| ||||| || |||||||| ||||| |||||||| | || || Sbjct 204624 GAATTTTTCTTCCATACCATGGCAGGACGTGAAGGACTTATTGATACAGCTGTGAAGACA 204683 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 | |||||||||||| | || | |||||| | || | |||||| || | | | Sbjct 204684 TCAGATACTGGTTATCTACAGCGTAAACTTATTAAAGCATTGGAAGATGTTCATGCCGCA 204743 Query 435253 TATGATGGTACAGTGAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAAT 435312 |||||||||||||| | ||||| ||| ||||||| | | | |||||||| || Sbjct 204744 TATGATGGTACAGTTCGTAATGCCAATCAAGAACTTATTCAACTTATGTATGGTGAAGAT 204803 Query 435313 GGTATTA 435319 || |||| Sbjct 204804 GG-ATTA 204809 >seq166 Length=457962 Score = 89.7 bits (98), Expect = 4e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 401560 GAACCTGTTTATTATGCTCCTATTATTCCAATGATACTTGTAAATGGAGCTGAAGGAATT 401619 |||||| ||||||||| |||||||||||||||| |||||||||||||| || || ||| Sbjct 232269 GAACCTTTTTATTATGTTCCTATTATTCCAATGGTACTTGTAAATGGAACTTCTGGTATT 232210 Query 401620 GGTACTGGATATTCAACAAAAATT 401643 || || |||| | |||| || ||| Sbjct 232209 GGAACAGGATTTGCAACTAATATT 232186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740614738448094