Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq244 125 1e-23 >seq244 Length=386007 Score = 125 bits (138), Expect = 1e-23 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||||| |||||| | | || || || | |||||| || || || ||||| || || | Sbjct 42366 ATCAC--ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGT 42309 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || | || | | || || || || || || ||||||||||| || | ||||||| Sbjct 42308 AGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGAT 42249 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | || || || || ||||| || ||||||||||| || ||||| |||| || || | | Sbjct 42248 CCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGG 42189 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || | | || |||||||||||||| |||||||| || |||||||| || Sbjct 42188 CCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCATAAT 42131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823187088141