Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq244 136 4e-27 >seq244 Length=386007 Score = 136 bits (150), Expect = 4e-27 Identities = 341/506 (67%), Gaps = 13/506 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||| || || |||||||| ||||| || ||||||| || |||||| | | Sbjct 101604 CTGGTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTC 101545 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGT-ACGAG 120467 |||||| || ||||| || | | || || || |||| || |||| || || || Sbjct 101544 CATAAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGT-TG--CCAAGTGCGACCAG 101488 Query 120468 CAGTCGGTCCGCTACAAACTCAATGTAC-TCGCACATGGACTGCGCGTTCATGCCCAGCA 120526 |||||||||||| || || |||||||| | || |||| | || |||||| || | || Sbjct 101487 CAGTCGGTCCGCCACGAATTCAATGTATGTTGC-CATGAGATCCGAGTTCATCCCGATCA 101429 Query 120527 ACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 ||| || | ||| || ||||| ||| || ||||||||||| || | Sbjct 101428 GTCGCACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGA 101369 Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGG-TAGTACAGGCAC 120645 | | | || | |||| ||||| | ||| |||| || | |||||| Sbjct 101368 TCTCATGGATTCGCTCCTTTGGCAGCTTGTTGACAATGTA-GTTCTCATACAAGAGGCAC 101310 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 |||||||| || ||||| ||||| || ||||| || ||||||||||| |||||||| ||| Sbjct 101309 GCAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCG 101250 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||| | || | |||| | |||| | ||| || ||| || ||||| | Sbjct 101249 GGCATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATA 101190 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 |||||||| ||| || || || | ||||| || |||| | || | ||| |||| Sbjct 101189 CCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACG-AGTCGGC--ACTGCGGATC 101133 Query 120826 CACTTCATGGCCCACTCGGCCTTTTT 120851 ||| || |||||||| ||||| || Sbjct 101132 CACCGGATCGCCCACTCCGCCTTCTT 101107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418872359560