Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq22 279 1e-69 seq166 134 3e-26 >seq22 Length=626277 Score = 279 bits (308), Expect = 1e-69 Identities = 548/800 (69%), Gaps = 13/800 (2%) Strand=Plus/Minus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || ||||| ||||| ||||||||||| || || | |||||||||||| | ||| | ||| Sbjct 348098 GAGCGTCCACAACATATGTTTCTTCGGGTAGCTTTAGGTATTCATGGAGAAGATTTGAAA 348039 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA--TGCTACTCCTA 110481 ||| | ||| |||||| || | || | | | | || ||| ||||| | Sbjct 348038 CGTGTAAAGGAAACATATGATTTAAT--GTCTCTGGGATTTTTTACACATGCCACTCCAA 347981 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 || |||||||| | || || |||| || ||| || || ||| | | ||| Sbjct 347980 CCTTATTTAACTCTGGTACACCATACCCACAAATGAGTTCATGTTTCCTTGTTGCAATGC 347921 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | || ||| |||||| || ||||||||| | |||||| | |||| |||| ||||| Sbjct 347920 AAGAAGATAGTATTGAGGGAATTTATGATACACTTAAACAGTGTGCTATTATCAGTAAAA 347861 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 |||| || |||||| |||| |||||| |||||||||| ||| |||| ||| Sbjct 347860 TGGCTGGTGGTATTGGTGTTCATGTTCATAATATTCGCTCTGCTGGAAGTTATATTGCAG 347801 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | |||| || | |||| ||||||||| || ||| | | || | || |||| || Sbjct 347800 GAACGAATGGAACATCAAATGGACTTGTACCGATGCTTCGTGTGTGGAATAACACAGCTC 347741 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 ||||| ||||||||||| || | || || | |||||| | ||||| ||||||| Sbjct 347740 GTTATGTAGATCAAGGTGGTGGTAAACGCAAGGGTGCGTTTGCTGTTTATCTTGAACCTT 347681 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| |||||| ||| | ||| | ||| || ||| ||| ||||| ||| Sbjct 347680 GGCATGGAGATATTTTTAACTTCCTCTTACTAAAGAAGAATACTGGAAAAGAAGATCAAC 347621 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | |||||||| | |||||||| |||||||| | |||||||||||| ||||||| || Sbjct 347620 GTGCACGTGACCTCTTTTATGCCCTGTGGATTCCTGATTTATTCATGGAACGTGTGGAAA 347561 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TGTATAT 110957 || || | |||| | |||||| ||| || | | || || || ||| ||| ||| Sbjct 347560 AACGTGATAAGTGGACACTTATGGATCCAAATACTGCACCAGGATTAAGTGACTGT-TAT 347502 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA- 111016 || | || ||| | || | || ||| |||||||| ||||| | || | ||| | Sbjct 347501 GGTGAGGAATTTAATGAGTTATATGAACGTTATGAAAAGGAAGG-ACGTGGTGTAAAAAC 347443 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 ||||| ||| ||||| |||||||| || |||||||||||| | ||||| ||| ||| Sbjct 347442 AATTCAAGCACAAGATCTTTGGTTTGCTATACTTGAATCACAAATGGAAACAGGAGTTCC 347383 Query 111077 TTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 || ||| | ||||||||| ||| |||| ||||| || || | || | || || Sbjct 347382 TTTTATGCTCTATAAAGATGCAT-GTAATAAGAAATCGAACCAGAAAAACATTGGTGTAA 347324 Query 111136 TTAAGTCTAGTAATTTGTGC 111155 | |||| | |||||| ||| Sbjct 347323 TCAAGTGTTCTAATTTATGC 347304 Score = 105 bits (116), Expect = 2e-17 Identities = 314/477 (66%), Gaps = 17/477 (4%) Strand=Plus/Minus Query 112968 CTTAAAGATAGTGTTATGAAACA--TGGAACTACAAACTCTCTACTGTTGGCACCAATGC 113025 ||||| || |||||| |||| ||| | | ||| ||| |||| ||||| ||||||| Sbjct 346835 CTTAAGGAACGTGTTA--AAACGAGTGGTATGAGAAATTCTTTACTCTTGGCTCCAATGC 346778 Query 113026 CTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGTA 113085 | || || || || | || ||||| ||||||||||| ||||| || || |||| | Sbjct 346777 CAACTGCATCAACATCTCAAATTCTTGGTAATAATGAGTGTTTTGAACCCTTTACTTCCA 346718 Query 113086 ATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAAATATCTGCAAG 113145 |||||||||| || ||||||||| ||||| || || |||||| ||||| Sbjct 346717 ATATTTATGTACGTCGTGTTCTAAGTGGTGAATTCCCTGTTGTTAATAAGTATCTTGTTA 346658 Query 113146 AAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACTCCATTATTGCTAATC 113205 || ||| | | | || ||||| |||| || ||| |||||||| || Sbjct 346657 TGGATCTTATTAAACTTGGACTTTGGAATGATGATATGCGAAATCAGATTATTGCATATA 346598 Query 113206 AAGGTTCGGTTC--AACATCTA--AAATTGC--CTGATTGCGTGAAAGATGTATTTAAGA 113259 | ||||| |||| || ||| | ||||| | ||||| | || || ||| ||| Sbjct 346597 ATGGTTCAGTTCAGAATATCAAGGAAATTCCATCTGAT---CTTAAGGAATTATATAAAG 346541 Query 113260 CTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAGTTTA 113319 | | ||||||||| || | | | ||||||||||| || |||||||| || | Sbjct 346540 TTGTCTGGGAAATTCGACAGAGAGATTTGATTGATATGGCAGCGGATCGTGGAAAATACG 346481 Query 113320 TCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACACCTCAC--CAGATAAGGTGAC 113377 | ||||| ||| | || ||||| || | | | | || || | || |||| Sbjct 346480 TTGATCAGAGTCAAAGTTTAAATCTATTTTTG--GAAAAACCAACCTCAAGTCAGTTGAC 346423 Query 113378 ATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTGCG 113434 |||| | || ||| |||||| ||| |||| || ||||||||||| ||||| Sbjct 346422 ATCTATGCATTTCTACACATGGAAATCTGGTCTAAAGACGGGTATGTATTACTTGCG 346366 >seq166 Length=457962 Score = 134 bits (148), Expect = 3e-26 Identities = 330/494 (67%), Gaps = 10/494 (2%) Strand=Plus/Minus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 ||| ||| | ||||| ||||| || | |||||| ||| | | || |||||||| Sbjct 232690 AGAGTTTGTCGATAAGGAACTTATTCTCTTTTCTGTAGCAGATTGTGAACGATCTATTCC 232631 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 | | || ||||| || |||||| || || |||||||| || || ||| ||| | Sbjct 232630 AAGTGTTATAGATGGATTAAAACCTGGTCAACGAAAGATTATTTTTTCTTCTTTTAAACG 232571 Query 279925 AAAATTGGTAAAGGAA--ATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCA 279982 || | || | || ||| || | || | || ||||| ||||| |||||||| Sbjct 232570 TAACCT--TACACGATCTATTAAGGTGGTACAACTTGCTGGTTACGTTTCTGAACATGCC 232513 Query 279983 GGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 | ||||||||| || ||| || | | |||| ||||| | || ||||||| | Sbjct 232512 GCTTATCATCATGGAGAACAATCATTAGTACAAACTATAGTAGGATTAGCACAAGATTAT 232453 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAA-ATGGTCAATTTGGTTCTCGTATTCA 280101 ||| ||||| || ||| || || || ||| |||||||||||||| | ||| | || Sbjct 232452 GTGGGATCAAATAATTTACCACTA-TTACAACAAGATGGTCAATTTGGTACACGTTTGCA 232394 Query 280102 CAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAA 280161 || |||||||||| | |||||| || |||| | ||| || ||||| ||| Sbjct 232393 AGGAGGTAAAGATCATGCCGCAGGTCGTTATATCTTTACACGACTTGCAAATATTGCAAG 232334 Query 280162 CAAGTTATTTATCAAT--TCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTT 280219 | |||||||||| || ||| || | |||| | || |||||||| ||| Sbjct 232333 --ATTTATTTATCACCCATCAGATGATTATGTTGTAGAATATAAGGATGATGATGGACTT 232276 Query 280220 GCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAA 280279 || | ||||| ||||||| ||| ||||| || ||| | ||||| ||||| || Sbjct 232275 TCTGTAGAACCTTTTTATTATGTTCCTATTATTCCAATGGTACTTGTAAATGGAACTTCT 232216 Query 280280 GGAATTGGAACAGG 280293 || ||||||||||| Sbjct 232215 GGTATTGGAACAGG 232202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807949273559