Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq249 95.1 1e-14 >seq249 Length=322816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 145668 GCATATGATGCAATATTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCAC 145727 ||||| || |||||||||||||||| || || | ||| || ||||||||| || Sbjct 217563 GCATAAGAGGCAATATTAAATGGAACTCCCAGTCCCATATCACAGGAGCGTTGATACAAC 217504 Query 145728 -TGCAA-ATCCAAATAGCCATTACGCACATTAAATTGATAGAACATATGACAAGGTGGTA 145785 | || || || | ||||||| |||| |||||| ||||||||||||||||||| Sbjct 217503 ATACAGGAT--AACTCCCCATTACTTACATAGAATTGAGCTAACATATGACAAGGTGGTA 217446 Query 145786 ATGCCATT--TGCTTGAGTTCAGCTGGATTCCATGCTGAAACAATTTGACGTCTATCATT 145843 | |||||| || | || | || ||||||||||| | ||||| | |||||||| Sbjct 217445 AAGCCATTCGTGATAAAG--CCGCGGGATTCCATGCAGTGACAATCATTCTTCTATCATC 217388 Query 145844 TGGCAGTTTTTTAATACGATCAACAACTTCTATAATTTGGTCTACACC 145891 ||| | |||| || || || |||| | ||||||| || || || Sbjct 217387 TGGATTTGTTTTTATGGTCTCCACCACTTGTTTAATTTGATCCACCCC 217340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527866695123160