Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq244 98.7 9e-16 >seq244 Length=386007 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||| || || || ||||| ||||| | | Sbjct 42327 GACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCA 42268 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || || || || || || ||| ||| |||| Sbjct 42267 AAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCCTTCACA 42208 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || ||||| ||| | | |||||| |||| | | || || || |||| || ||| Sbjct 42207 TTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTT 42148 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 42147 ACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609299512840