Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq244 232 1e-54 >seq244 Length=386007 Score = 232 bits (256), Expect = 1e-54 Identities = 403/578 (70%), Gaps = 11/578 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||||||||| ||||| |||||| |||| | || || ||| ||||| Sbjct 100702 GAGCCACTGCTGCGCGAGAACCCAGACCGCTATGTCTTATTTCCTATCAAGTACCACGAC 100761 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 | ||| | | ||| || |||||||| | | ||||| | |||||| | || || Sbjct 100762 GTCTGGCAGAAATAC-AAGGAGGCCGAGAGCAGTATCTGGACAGTGGAGGAGATTGATCT 100820 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| || | ||| |||||| | ||||| ||| | || || || ||||||||||| Sbjct 100821 GGGCAATGATATGGTGGACTGGGAGAAGCTGAACGATGGGGAACGACACTTCATCAAGCA 100880 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||| || || || ||| || || || || || ||| |||||| |||| |||| Sbjct 100881 CGTCCTTGCGTTCTT-CGCTGCGAGTGACGGAATTGTGCTGGAGAACTTGGCACAGCGCT 100939 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| |||||| || |||| || | || | || |||||||||||||||||||| | Sbjct 100940 TCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTACGGGTTCCAGATCGCCATTG 100999 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || | ||||| || || ||||| | ||| | || || ||| ||| ||| ||| | Sbjct 101000 AGAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGTACATCACCGACTTGGTAG 101059 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||||| | || | | |||||| ||| | || | | ||| ||||| || | Sbjct 101060 AGAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGT 101119 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCT 1456194 ||||||| ||||||| | || || |||| | || || ||||| ||||| | | Sbjct 101120 GGGCGATCCGGTGGATC----CGCAGTGC--CGACTCGTTCGCAGAGCGTCTCGTTGCAT 101173 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||||| || ||||| || || ||||| ||| |||||||| | || ||||| |||| Sbjct 101174 TCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGA 101233 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 |||| || || |||||||| || | || |||||||| Sbjct 101234 AGCGTGGTCTGATGCCCGGACTGACG-TTCAGCAACGA 101270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177780431863678