Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq244 127 2e-24 seq286 82.4 7e-11 >seq244 Length=386007 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| ||||||||||| || |||| ||| || | || || Sbjct 42343 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 42284 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| ||||| || | ||||| || |||| |||| | |||||||||| Sbjct 42283 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 42224 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | || |||||||| | |||||||| | | || || || Sbjct 42223 AATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTT 42164 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 42163 GCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 >seq286 Length=961496 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | |||| |||||| ||||||||||| || |||| ||| || | || || Sbjct 812635 CACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 812694 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 |||||||||||| ||||| || | ||||| || |||| Sbjct 812695 CAGCTGCTTACCAGCAAAAATAAGACGCTGTTGATCCG 812732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791802460520