Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq244 122 9e-23 >seq244 Length=386007 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| ||||| |||||||| ||||| |||||||||||||| | Sbjct 42360 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 42301 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| || | |||||| ||||| || || Sbjct 42300 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 42241 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| ||| || || || | |||||| | ||||| Sbjct 42240 ATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACC 42181 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | |||||| || || || || || || ||||| || ||||| Sbjct 42180 TCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/262 (69%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 || ||||||||||||||||||||| |||| || | ||||| || | ||| ||| Sbjct 101483 CGGTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAG-TCG 101425 Query 21604 -ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGC 21662 || || ||||| ||| || ||||| |||||| ||||||| || ||| || | Sbjct 101424 CACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTC 101365 Query 21663 GTGTATTT-CACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGAC 21721 || ||| | || || || |||| ||| | ||||| || | || |||| | Sbjct 101364 ATGGATTCGCTCCTTTGG-CAGCTTGT--TGA----CAATGTAGTTCTCATACAAGAGGC 101312 Query 21722 AAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGAC 21781 | ||||| | ||| |||| ||||| || ||||| || | |||||||||||||| || | Sbjct 101311 ACGCAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTC 101252 Query 21782 CGGGCATTAAACCTCGAttttt 21803 ||||||| | ||| || || || Sbjct 101251 CGGGCATCAGACCACGCTTCTT 101230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| ||||| |||||||| ||||| |||||||||||||| | Sbjct 41531 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 41472 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||| || || ||||| || | |||||| ||||| || || Sbjct 41471 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGG 41413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396384723880