Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq253 127 3e-24 seq197 127 3e-24 >seq253 Length=1126320 Score = 127 bits (140), Expect = 3e-24 Identities = 369/559 (66%), Gaps = 22/559 (4%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 ||| | ||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| || Sbjct 262449 GCTATTATCACCGGTATCACTGGCCAGGACGGCTCCTATCTCGCTGAGCTTCTGCTGGAG 262390 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGA--A 161081 ||||| || || || || ||| ||||||| | ||||||| || || || |||| | Sbjct 262389 AAGGGCTACGATGTGCACGGTGTTATTCGCCGCTCCTCCTCCTTCAACAC--GAAGCGCA 262332 Query 161082 TCGATCATATCTT------CGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCC 161135 | || ||||| | ||| || | | || |||||||| ||| |||||||| Sbjct 262331 TTGACCATATTTATCGCAACGAGCACCTCAAGCTGCACTACGGCGATATGACTGACG--- 262275 Query 161136 TGAACATAGT--CTCTA--TCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGG 161191 | || || | | | |||| | | || || ||| | |||||||| | Sbjct 262274 -GGACGGTGTTGCACCACCTCATCGCACAGCTGCGCCCAGACGAGGTGTACAACCTCGCC 262216 Query 161192 GCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCT 161251 || || || ||||| || || ||||| ||| || || || | ||||| || || Sbjct 262215 GCCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTACACGGGGCAGACAGACGCC 262156 Query 161252 CTGGGAACCCT-AAGAGTATTGGAGGCAGTTCGT-CTCCTAGGTATGACAGATAGGGTCC 161309 | || | || |||| ||| | || | ||| | | | | || | | ||| Sbjct 262155 ATTGGTGCTCTGAAGATCCTTGACGCCA-TCCGTGCGAATGGCTTGGAGAAGACGTGTCG 262097 Query 161310 GTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAG 161369 | ||||||||||| ||| || |||||||| || ||| || ||| || ||| || Sbjct 262096 CT-TCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAG 262038 Query 161370 AAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGA 161429 | | ||||| ||||| ||||| ||||| | ||| || |||||||| | | |||| Sbjct 262037 AGAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGA 261978 Query 161430 TTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACC 161489 || | ||||||| | ||| || || ||| ||| | | ||||||||| ||||||| Sbjct 261977 TTACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACC 261918 Query 161490 ATGAGTCACCACGACGGGG 161508 | ||||| || ||||| || Sbjct 261917 ACGAGTCCCCCCGACGTGG 261899 Score = 123 bits (136), Expect = 4e-23 Identities = 368/558 (66%), Gaps = 20/558 (4%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 ||| | ||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| || Sbjct 266927 GCTATTATCACCGGTATCACTGGCCAGGACGGCTCCTATCTCGCTGAGCTTCTGCTGGAG 266868 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGA--A 161081 ||||| || || || || ||| ||||||| | ||||||| || || || |||| | Sbjct 266867 AAGGGCTACGATGTGCACGGTGTTATTCGCCGCTCCTCCTCCTTCAACAC--GAAGCGCA 266810 Query 161082 TCGATCATATCTT------CGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCC 161135 | || ||||| | ||| || | | || |||||||| ||| |||||||| Sbjct 266809 TTGACCATATTTATCGCAACGAGCACCTCAAGCTGCACTACGGCGATATGACTGACGG-- 266752 Query 161136 TGAACATAGT-CTCTA--TCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGG 161192 || | | | | | |||| | | || || ||| | |||||||| | | Sbjct 266751 -GACGGTGCTGCACCACCTCATCGCACAGCTGCGCCCAGACGAGGTGTACAACCTCGCCG 266693 Query 161193 CACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTC 161252 | || || ||||| || || ||||| ||| || || || | ||||| || || Sbjct 266692 CCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTACACGGGGCAGACAGACGCCA 266633 Query 161253 TGGGAACCCT-AAGAGTATTGGAGGCAGTTCGT-CTCCTAGGTATGACAGATAGGGTCCG 161310 | || | || |||| ||| | || | ||| | | | | || | | ||| Sbjct 266632 TTGGTGCTCTGAAGATCCTTGACGCCA-TCCGTGCGAATGGCTTGGAGAAGACGTGTCGC 266574 Query 161311 TATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGA 161370 | ||||||||||| ||| || |||||||| || ||| || ||| || ||| ||| Sbjct 266573 T-TCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAGA 266515 Query 161371 AACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGAT 161430 | ||||| ||||| ||||| ||||| | ||| || |||||||| | | ||||| Sbjct 266514 GAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGAT 266455 Query 161431 TGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCA 161490 | | ||||||| | ||| || || ||| ||| | | ||||||||| |||||||| Sbjct 266454 TACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCA 266395 Query 161491 TGAGTCACCACGACGGGG 161508 ||||| || ||||| || Sbjct 266394 CGAGTCCCCCCGACGTGG 266377 >seq197 Length=1752 Score = 127 bits (140), Expect = 3e-24 Identities = 369/559 (66%), Gaps = 22/559 (4%) Strand=Plus/Plus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 ||| | ||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| || Sbjct 252 GCTATTATCACCGGTATCACTGGCCAGGACGGCTCCTATCTCGCTGAGCTTCTGCTGGAG 311 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGA--A 161081 ||||| || || || || ||| ||||||| | ||||||| || || || |||| | Sbjct 312 AAGGGCTACGATGTGCACGGTGTTATTCGCCGCTCCTCCTCCTTCAACAC--GAAGCGCA 369 Query 161082 TCGATCATATCTT------CGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCC 161135 | || ||||| | ||| || | | || |||||||| ||| |||||||| Sbjct 370 TTGACCATATTTATCGCAACGAGCACCTCAAGCTGCACTACGGCGATATGACTGACG--- 426 Query 161136 TGAACATAGT--CTCTA--TCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGG 161191 | || || | | | |||| | | || || ||| | |||||||| | Sbjct 427 -GGACGGTGTTGCACCACCTCATCGCACAGCTGCGCCCAGACGAGGTGTACAACCTCGCC 485 Query 161192 GCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCT 161251 || || || ||||| || || ||||| ||| || || || | ||||| || || Sbjct 486 GCCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTACACGGGGCAGACAGACGCC 545 Query 161252 CTGGGAACCCT-AAGAGTATTGGAGGCAGTTCGT-CTCCTAGGTATGACAGATAGGGTCC 161309 | || | || |||| ||| | || | ||| | | | | || | | ||| Sbjct 546 ATTGGTGCTCTGAAGATCCTTGACGCCA-TCCGTGCGAATGGCTTGGAGAAGACGTGTCG 604 Query 161310 GTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAG 161369 | ||||||||||| ||| || |||||||| || ||| || ||| || ||| || Sbjct 605 CT-TCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAG 663 Query 161370 AAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGA 161429 | | ||||| ||||| ||||| ||||| | ||| || |||||||| | | |||| Sbjct 664 AGAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGA 723 Query 161430 TTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACC 161489 || | ||||||| | ||| || || ||| ||| | | ||||||||| ||||||| Sbjct 724 TTACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACC 783 Query 161490 ATGAGTCACCACGACGGGG 161508 | ||||| || ||||| || Sbjct 784 ACGAGTCCCCCCGACGTGG 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729926689405720