Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq22 273 3e-68 >seq22 Length=626277 Score = 273 bits (302), Expect = 3e-68 Identities = 885/1352 (65%), Gaps = 39/1352 (3%) Strand=Plus/Plus Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 |||| | |||||| | | ||||| ||| || || | ||| |||||||| Sbjct 346663 AGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAATATTGGAA 346722 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||| | ||||| | | | |||||||| || |||||||||| ||||||||||||||||| Sbjct 346723 GTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGTTGGCATT 346782 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 || |||| | |||| |||||| | |||| ||| | | || || || | | Sbjct 346783 GGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAGTGCATCC 346842 Query 68881 CAATCCCAAAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 || | ||| | || |||| | ||| | ||| |||||| | || | | Sbjct 346843 CAGTTCCACCGTCCACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAATAAACCTTGA 346902 Query 68938 CTTGCATATGA-TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAAC 68995 ||| || ||| || | || ||||||| |||||||| | |||||| || || | Sbjct 346903 GAAGCAG--GACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAGATCGACGC 346960 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCT 69054 | || || | ||| ||||||||||||| || ||||| ||||| ||| | ||||| || Sbjct 346961 TAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAATCTTTAGCC 347019 Query 69055 TCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCA 69114 | ||| |||||| || | | ||| |||||||| ||| || || ||| Sbjct 347020 TTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATCTGCCATTCCTTGTACACCA 347079 Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA---GCTTCTGGAATAGGATAATAA 69171 ||||||||||||| || | | |||| ||| || |||| ||| | ||||||||| Sbjct 347080 ATACCGATAGGTCGATTACGCATATT---ACTGTCGCGTGCTTGTGGTAACGGATAATAA 347136 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT-- 69229 || ||||| |||| | | || | ||||| || ||||| | || | |||| Sbjct 347137 TTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCATATAGTCGT 347196 Query 69230 ---TGAG-AAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGA 69285 ||| |||| || | | | || || ||| | | || | ||| || || Sbjct 347197 TGGTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGTAAAGCAATAGAAGCAAGG 347256 Query 69286 TTACAAACTGCTACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 ||||| ||||| | |||| |||| || |||| || || ||||| |||| |||| Sbjct 347257 TTACATACTGCAATTTCATCTTTAGA---TGAGTATTCCATGATTTCTGTGCATAAATTA 347313 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 ||| ||||| || | |||| ||| || || || ||||| || || || || Sbjct 347314 GAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAG 347373 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || ||||| ||| || ||||| || || ||||| | |||| ||||| || | | Sbjct 347374 AGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAACCAAA-GATCTTG 347432 Query 69463 -GCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 || | ||| | | || | | | || || |||||||| || ||||| | | Sbjct 347433 TGCTTGAATT--GTTTTTACACCACGTCCTTCCTTTTCATAACGTTCATATAACTCATTA 347490 Query 69520 AATTCATCTCCCCA-AACA-TCATCCAATCCAGGA-CATTCATTTGGACACATCAATGAC 69576 ||||| ||| ||| |||| ||| ||||| || || | ||||||| ||| | || | Sbjct 347491 AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGGATCCATAAGTGTC 347547 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 ||| |||| | | || |||| ||| |||| ||| |||||||| || || |||| Sbjct 347548 CACTTATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAATCCACAGGGCATAAAAG 347607 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 || || | | | | ||||| ||||| ||||| || || || ||| || | | | Sbjct 347608 AGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGTAAGAGGAAGTTAAAA 347667 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||| |||||| ||||| ||||| | || | | ||| |||||| || || Sbjct 347668 ATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCGTTTACCACCACCT 347727 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||||| || | || |||||||| | || | |||||||| | || ||||| ||| Sbjct 347728 TGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTACAAGTCCATTTGAT 347787 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 | ||||| ||||| | |||||||||||| | |||||||||| || | | ||| Sbjct 347788 GTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTATGAACATGAACACCA 347847 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || ||||||||| ||| | |||||| |||| | ||| ||||| || ||||| Sbjct 347848 ATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTATCATAAATTCCCTCA 347907 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 || ||||| ||| ||| || ||| ||||| | |||||| | | | || || Sbjct 347908 ATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGTGGGTATGGTGTACCA 347967 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 | |||||||| || |||| || || || || Sbjct 347968 GAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906060951160