Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq249 96.9 3e-15 seq255 86.0 5e-12 >seq249 Length=322816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 275/420 (65%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 40845 GGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACAT 40904 |||||||| || || ||| |||||||||||||| ||||||||||| | |||||| Sbjct 217235 GGATTACACGAATATGAAGAAATGGATCTTGGTCCTGTCTATGGATTTCAATGGCGACAC 217294 Query 40905 TTTGGAGCAAAATATGAC-ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATT 40963 ||||| || | ||| | | ||| | | ||||| ||||| |||||||| | Sbjct 217295 TTTGGTGCGGAGTATAAAGATTATAAAACCA-ATTATGATGGAAAAGGGGTGGATCAAAT 217353 Query 40964 ACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGC 41023 | || | || || || ||| | |||| ||| || | || || | || Sbjct 217354 TAAACAAGTGGTGGAGACCATAAAAACAAATCCAGATGATAGAAGAATGATTGTCACTGC 217413 Query 41024 GTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTT 41083 ||||| || ||| || ||||| || |||||||||||| ||||| ||| || Sbjct 217414 ATGGAATCCCGCGGCTTTATCACGAATGGCTTTACCACCTTGTCATATGTTAGCTCAATT 217473 Query 41084 TTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACT 41143 || || | ||||| || | || ||| ||||||||| | || |||| |||||||| Sbjct 217474 CTATGTAAGTAATGGGGAGTTATCCTGTATGTTGTATCAACGCTCCTGTGATATGGGACT 217533 Query 41144 AGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || || || ||||| || || |||||| | | || | ||||||| | | || Sbjct 217534 GGGAGTTCCATTTAATATTGCCTCTTATGCGTTATTAACAATTCTGATTGCGAAGGCAAC 217593 Query 41204 CAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCA 41263 | ||||| || ||| | |||||||| | || |||| |||| | || | ||||| Sbjct 217594 AGGACTGAAACCAGGGGAACTCGTTCACACACTTGGGGATGCACATGTGTATAAGAATCA 217653 >seq255 Length=269110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 115035 GTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGCT 115094 ||||||||||| |||| |||||| |||||||||||||||||||| || | || || Sbjct 27564 GTCATACGTGATGGAATAGCATGAGGATTAATAATCAAGTCTGGAACAATACCATCACGG 27623 Query 115095 GTGAACGGCATGTCGTGCTGATCGTACAT-CATTCCACAAGTTCCTTTTTGAGCGGTAAA 115153 | || ||||| || | ||| || | | |||||| ||||||||||||| | | | Sbjct 27624 TTAAAAGGCATATCCTCTTGA-CGAAATTGAATTCCATTAGTTCCTTTTTGA-CCATGAC 27681 Query 115154 CGATGCA-AATTTATCACCAATCTCAGG 115180 | |||| |||||||||||||| | ||| Sbjct 27682 GGCTGCAGAATTTATCACCAATATTAGG 27709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454454765595