Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq244 125 9e-24 seq277 86.0 8e-12 seq44 86.0 8e-12 seq66 84.2 3e-11 seq55 84.2 3e-11 seq15 84.2 3e-11 >seq244 Length=386007 Score = 125 bits (138), Expect = 9e-24 Identities = 353/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 122429 || || || ||| ||||||||||||||| ||||| || | ||| | ||| | ||||| Sbjct 101600 TACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGA-AATCATCTCCAT 101542 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489 ||||||||| |||||||| | || || || |||| | || || || Sbjct 101541 AAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGCCAAGTGCGACCAGCAGTCG 101482 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| ||| | |||||||| | ||| || |||||||| ||||| || | || Sbjct 101481 GTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAG-TCGCA 101423 Query 122550 -TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||| || || || |||||||| | ||| ||||| |||||||| | ||| | | Sbjct 101422 CTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCAT 101363 Query 122609 GGATAGTTTC----GGTAGTGGGTCTATTACGCAAAG-TCTTG-AAGAGCTCCACGGCAA 122662 |||| || || || || | | | | || | ||||| |||| ||| Sbjct 101362 GGATTCGCTCCTTTGGCAGCTTGTTGACAATGTAGTTCTCATACAAGAGG--CACG-CAA 101306 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || || ||||||||||| || || || || || || ||| || || |||| Sbjct 101305 AGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCA 101246 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||||| ||| | | ||||||||||| || |||||||| ||||||| Sbjct 101245 TCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCT 101186 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG-CGAGACTTTGCATCAAACCAT 122841 |||| || || |||| || || || ||||| ||| || ||| | || ||| Sbjct 101185 CCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTGCGGAT----CCAC 101130 Query 122842 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || ||||| | ||||||||||| |||||||| | ||| |||||| Sbjct 101129 CGGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGC 101080 >seq277 Length=72614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 10183 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 10242 Query 145344 GGTAGGA 145350 ||||||| Sbjct 10243 GGTAGGA 10249 >seq44 Length=572910 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 406298 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 406239 Query 145344 GGTAGGA 145350 ||||||| Sbjct 406238 GGTAGGA 406232 >seq66 Length=549782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 371154 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 371095 Query 145342 CAGGTAGGAGCTTT 145355 ||||||||||| || Sbjct 371094 CAGGTAGGAGCATT 371081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 371291 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 371350 Query 145342 CAGGTAGGAGCTTT 145355 ||||||||||| || Sbjct 371351 CAGGTAGGAGCATT 371364 >seq55 Length=565556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 212653 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 212594 Query 145342 CAGGTAGGAGCTTT 145355 ||||||||||| || Sbjct 212593 CAGGTAGGAGCATT 212580 >seq15 Length=23584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 9925 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 9984 Query 145342 CAGGTAGGAGCTTT 145355 ||||||||||| || Sbjct 9985 CAGGTAGGAGCATT 9998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029495722400