Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq244 201 1e-46 seq253 84.2 3e-11 seq197 84.2 3e-11 >seq244 Length=386007 Score = 201 bits (222), Expect = 1e-46 Identities = 579/870 (67%), Gaps = 38/870 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || |||||| |||||| |||||||| ||||| || | ||| || |||||||| Sbjct 101600 TACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCATA 101541 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGA---GGAGA 129844 || ||||| || |||||||| || || | | |||| || || | || Sbjct 101540 AAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGCCAA---GTGCGACCAGCAGT 101484 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| | |||||||| | ||| || |||||||| ||||| || | Sbjct 101483 CGGTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAG-TCG 101425 Query 129905 CA-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || ||| ||||| || |||||||| | ||| || ||||| || || | | ||| | Sbjct 101424 CACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTC 101365 Query 129964 GTGAATGGTCTCCGT-GCCAGGTCTATTGCGCAAAGTCTTG-------AAGAGTTCCACG 130015 || || |||| | | ||| | | ||| ||| || | ||||| |||| Sbjct 101364 ATGGATTCGCTCCTTTGGCAGCT-TGTTGA-CAATGTAGTTCTCATACAAGAGG--CACG 101309 Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 |||| || || |||||||| || || |||||||| || || ||| ||| || Sbjct 101308 -CAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCG 101250 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||||| |||||| | || || ||||||||||||||||| || Sbjct 101249 GGCATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATA 101190 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAAA 130194 |||||||| ||||| |||| ||||||||| || || ||| ||| ||| | || Sbjct 101189 CCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTGCGGAT---- 101134 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 130252 |||| |||||||||| |||||| |||| |||||| || | || ||| || | || Sbjct 101133 CCACCGGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAG 101074 Query 130253 AAGA-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 130311 |||| | ||||||| | | | || |||||||| |||| | || ||| || || Sbjct 101073 AAGACGATCCTTCTCTACCAA---GTCGGTGATGTACGTATCCAGCAGCACTGAGTACGT 101017 Query 130312 TTCGCCATGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 130369 ||| || || | ||| ||||| ||| || ||||||| ||||| |||| Sbjct 101016 CTCGGAGTGCACATTCTCA--ATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGC 100959 Query 130370 ATCTGTACCTCATCTGCAAAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCC 130428 | ||| ||||| | | || | | | | ||||| | |||||||| || | | Sbjct 100958 ACCTGCACCTC-TGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGC 100900 Query 130429 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCA 130488 ||| || ||||| |||| | ||| ||||| | |||| |||||||| ||| ||| Sbjct 100899 AGCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCA 100840 Query 130489 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTT 130548 ||| | | ||| || ||||| | ||||||| | ||||| | || | | |||| Sbjct 100839 GTCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATACTGCTCTCGGCCTC 100780 Query 130549 CTTATAGAGTTCCCAGAGGTGGGGATACTT 130578 ||| || | ||||| || | | ||||| Sbjct 100779 CTTGTATTTCTGCCAGACGTCGTGGTACTT 100750 >seq253 Length=1126320 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||| ||||| || || || ||| | || |||||| ||||||||| |||||||||||||| Sbjct 261970 GAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACGAGTC 261911 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGAT 12019 ||||| |||||| | || ||||| |||||||| Sbjct 261910 CCCCCGACGTGGCGCAACATTTGTGACGAAGAAGAT 261875 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||| ||||| || || || ||| | || |||||| ||||||||| |||||||||||||| Sbjct 266448 GAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACGAGTC 266389 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGAT 12019 ||||| |||||| | || ||||| |||||||| Sbjct 266388 CCCCCGACGTGGCGCAACATTTGTGACGAAGAAGAT 266353 >seq197 Length=1752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||| ||||| || || || ||| | || |||||| ||||||||| |||||||||||||| Sbjct 731 GAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACGAGTC 790 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGAT 12019 ||||| |||||| | || ||||| |||||||| Sbjct 791 CCCCCGACGTGGCGCAACATTTGTGACGAAGAAGAT 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432733989640