Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq22 181 1e-40
seq244 122 1e-22
>seq22
Length=626277
Score = 181 bits (200), Expect = 1e-40
Identities = 661/1021 (65%), Gaps = 29/1021 (3%)
Strand=Plus/Minus
Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992
||||| || ||||| || ||||| | || || || || || | ||||| ||||||
Sbjct 347378 ATGCTCTATAAAGATGCATGTAATAAGAAATCGAACCAGAAAAACATTGGTGTAATCAAG 347319
Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052
|||| ||| | || ||||||||| |||||| || |||||||| | || || |||
Sbjct 347318 TGTTCTAATTTATGCACAGAAATCATGGAATACTCATCTAAAGATGAAATTGCAGTATGT 347259
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112
||||| || || || ||| | || | | | ||| || | ||| |||||| |
Sbjct 347258 AACCTTGCTTCTATTGCTTTACCTCGTTTTATTGATGAGGAAAAAAATGTTTTTGATCAC 347199
Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172
|| ||| | ||| | || ||| ||| || | ||| | ||||||||||||||||
Sbjct 347198 CAACGACTATATGAAATAACAAAAGTTGTGACAAGAAATTTGAACAGAGTTATTGATATG 347139
Query 105173 AATTTTTACCCCGTTGAGAC-TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231
|||| ||| ||||| || || || | ||||||| | | || || || ||| |
Sbjct 347138 AATTATTA-TCCGTTACCACAAGCACGCGACAGTAATATGCGTAATCGACCTATCGGTAT 347080
Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTC---ATTCTTTGTCGCCACGCATTTGATTCCGA 105288
||||| || || | || ||| ||||| || || | | | ||||| | |
Sbjct 347079 TGGTGTACAAGGAATGGCAGATTTATTCACAATGCTAAGACTTC---CATTTACTAGCAG 347023
Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348
| || || || | |||| || |||||||| || ||| ||||||| | || ||
Sbjct 347022 TAAGGCTAAAGATTTAAATGAAGAAATTTTTGAGACAATTTATTACGCCGCAGTGGAAGC 346963
Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408
|| || | || || | || || |||||||||| ||| | || ||| |||||
Sbjct 346962 TAGCGTCGATCTTGCTGAAGAAGAAGGACCATATGAAAGATTTCAAGGGAGTCCTGCTTC 346903
Query 105409 ACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCAAGC--TTCAC--TACGA 105462
||||| | | |||||||| |||| || || | |||| || | || | |
Sbjct 346902 TCAAGGTTTATTACAATTTGATTTATGGGGTAA---AAAACCACGCAGTGGACGGTGGAA 346846
Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522
|||||| || || |||||||| | || || ||| | | || | | ||| ||||
Sbjct 346845 CTGGGATGCACTTAAGGAACGTGTTAAAACGAGTGGTATGAGAAATTCTTTACTCTTGGC 346786
Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582
|||||||||||| || || || | ||||| | ||||||||||| || ||||||||||
Sbjct 346785 TCCAATGCCAACTGCATCAACATCTCAAATTCTTGGTAATAATGAGTGTTTTGAACCCTT 346726
Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642
|| | || || ||| | | | || || || || |||| || ||| |
Sbjct 346725 TACTTCCAATATTTATGTACGTCGTGTTCTAAGTGGTGAATTCCCTGTTGTTAATAAGTA 346666
Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 105702
||| || || || | | |||| || ||| | |||||| ||| || |
Sbjct 346665 TCTTGTTATGGATCTTATTAAACTTGGACTTTGGAATGATGATATGCGAAATCAGATTAT 346606
Query 105703 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTA 105762
| |||||| |||| ||||| ||| |||||| ||| ||||| | || ||
Sbjct 346605 TGCATATAATGGTTCAGTTCAGAATATCAAGGAAATTCCATCTGATCTTAAGGAATTATA 346546
Query 105763 CCGCACAGTT---TGGGAAA-TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 105818
| |||| ||||||| || | | || ||| | ||||| ||||| || |||||||
Sbjct 346545 ---TAAAGTTGTCTGGGAAATTCGACA-GAGAGATTTGATTGATATGGCAGCGGATCGTG 346490
Query 105819 GTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC--GATGTC 105876
| | | ||||||| ||||||||| | ||||| || |||||| ||||| | |||
Sbjct 346489 GAAAATACGTTGATCAGAGTCAAAGTTTAAATCTATTTTTGGAAAAACCAACCTCAAGTC 346430
Query 105877 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 105936
|| | | |||||||| | |||| ||||| ||||| || ||||| ||||||||
Sbjct 346429 --AGTTGACATCTATGCATTTCTACACATGGAAATCTGGTCTAAAGACGGGTATGTATTA 346372
Query 105937 C 105937
|
Sbjct 346371 C 346371
>seq244
Length=386007
Score = 122 bits (134), Expect = 1e-22
Identities = 169/235 (72%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782
|||||| ||| |||| ||||| || ||||| ||||| ||||| || |||| ||
Sbjct 101080 GCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGG----AT 101135
Query 94783 ACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841
| ||| || || || || ||||| ||| | ||||| || || |||||||| ||
Sbjct 101136 CCGCAGTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATT 101195
Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901
||||||||| || |||||||| | | ||||| |||||||| ||||| ||||| || ||
Sbjct 101196 CTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACT 101255
Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956
||| ||||||||| ||||| || || ||||| || || || ||||||
Sbjct 101256 GACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGCG 101310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583258474247560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |