Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq22 181 1e-40 seq244 122 1e-22 >seq22 Length=626277 Score = 181 bits (200), Expect = 1e-40 Identities = 661/1021 (65%), Gaps = 29/1021 (3%) Strand=Plus/Minus Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| || ||||| || ||||| | || || || || || | ||||| |||||| Sbjct 347378 ATGCTCTATAAAGATGCATGTAATAAGAAATCGAACCAGAAAAACATTGGTGTAATCAAG 347319 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 |||| ||| | || ||||||||| |||||| || |||||||| | || || ||| Sbjct 347318 TGTTCTAATTTATGCACAGAAATCATGGAATACTCATCTAAAGATGAAATTGCAGTATGT 347259 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||||| || || || ||| | || | | | ||| || | ||| |||||| | Sbjct 347258 AACCTTGCTTCTATTGCTTTACCTCGTTTTATTGATGAGGAAAAAAATGTTTTTGATCAC 347199 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 || ||| | ||| | || ||| ||| || | ||| | |||||||||||||||| Sbjct 347198 CAACGACTATATGAAATAACAAAAGTTGTGACAAGAAATTTGAACAGAGTTATTGATATG 347139 Query 105173 AATTTTTACCCCGTTGAGAC-TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 |||| ||| ||||| || || || | ||||||| | | || || || ||| | Sbjct 347138 AATTATTA-TCCGTTACCACAAGCACGCGACAGTAATATGCGTAATCGACCTATCGGTAT 347080 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTC---ATTCTTTGTCGCCACGCATTTGATTCCGA 105288 ||||| || || | || ||| ||||| || || | | | ||||| | | Sbjct 347079 TGGTGTACAAGGAATGGCAGATTTATTCACAATGCTAAGACTTC---CATTTACTAGCAG 347023 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 | || || || | |||| || |||||||| || ||| ||||||| | || || Sbjct 347022 TAAGGCTAAAGATTTAAATGAAGAAATTTTTGAGACAATTTATTACGCCGCAGTGGAAGC 346963 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 || || | || || | || || |||||||||| ||| | || ||| ||||| Sbjct 346962 TAGCGTCGATCTTGCTGAAGAAGAAGGACCATATGAAAGATTTCAAGGGAGTCCTGCTTC 346903 Query 105409 ACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCAAGC--TTCAC--TACGA 105462 ||||| | | |||||||| |||| || || | |||| || | || | | Sbjct 346902 TCAAGGTTTATTACAATTTGATTTATGGGGTAA---AAAACCACGCAGTGGACGGTGGAA 346846 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||||| || || |||||||| | || || ||| | | || | | ||| |||| Sbjct 346845 CTGGGATGCACTTAAGGAACGTGTTAAAACGAGTGGTATGAGAAATTCTTTACTCTTGGC 346786 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 |||||||||||| || || || | ||||| | ||||||||||| || |||||||||| Sbjct 346785 TCCAATGCCAACTGCATCAACATCTCAAATTCTTGGTAATAATGAGTGTTTTGAACCCTT 346726 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 || | || || ||| | | | || || || || |||| || ||| | Sbjct 346725 TACTTCCAATATTTATGTACGTCGTGTTCTAAGTGGTGAATTCCCTGTTGTTAATAAGTA 346666 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 105702 ||| || || || | | |||| || ||| | |||||| ||| || | Sbjct 346665 TCTTGTTATGGATCTTATTAAACTTGGACTTTGGAATGATGATATGCGAAATCAGATTAT 346606 Query 105703 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTA 105762 | |||||| |||| ||||| ||| |||||| ||| ||||| | || || Sbjct 346605 TGCATATAATGGTTCAGTTCAGAATATCAAGGAAATTCCATCTGATCTTAAGGAATTATA 346546 Query 105763 CCGCACAGTT---TGGGAAA-TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 105818 | |||| ||||||| || | | || ||| | ||||| ||||| || ||||||| Sbjct 346545 ---TAAAGTTGTCTGGGAAATTCGACA-GAGAGATTTGATTGATATGGCAGCGGATCGTG 346490 Query 105819 GTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC--GATGTC 105876 | | | ||||||| ||||||||| | ||||| || |||||| ||||| | ||| Sbjct 346489 GAAAATACGTTGATCAGAGTCAAAGTTTAAATCTATTTTTGGAAAAACCAACCTCAAGTC 346430 Query 105877 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 105936 || | | |||||||| | |||| ||||| ||||| || ||||| |||||||| Sbjct 346429 --AGTTGACATCTATGCATTTCTACACATGGAAATCTGGTCTAAAGACGGGTATGTATTA 346372 Query 105937 C 105937 | Sbjct 346371 C 346371 >seq244 Length=386007 Score = 122 bits (134), Expect = 1e-22 Identities = 169/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| ||| |||| ||||| || ||||| ||||| ||||| || |||| || Sbjct 101080 GCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGG----AT 101135 Query 94783 ACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | ||| || || || || ||||| ||| | ||||| || || |||||||| || Sbjct 101136 CCGCAGTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATT 101195 Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 ||||||||| || |||||||| | | ||||| |||||||| ||||| ||||| || || Sbjct 101196 CTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACT 101255 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| ||||||||| ||||| || || ||||| || || || |||||| Sbjct 101256 GACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGCG 101310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258474247560