Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq244 203 4e-47 >seq244 Length=386007 Score = 203 bits (224), Expect = 4e-47 Identities = 544/813 (67%), Gaps = 19/813 (2%) Strand=Plus/Plus Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATT 59676 ||||| | || ||||||||||| || | | || || ||| ||||| ||||| || Sbjct 100796 TCTGGACAGTGGAGGAGATTGATCTGGGCAATGATATGGTGGACTGGGAGAAGCTGAACG 100855 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 | | || | || ||||||||| ||||| || |||||||| |||||||| ||||||| Sbjct 100856 ATGGGGAACGACACTTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTG 100915 Query 59737 TGATGGAAAATATAG-ACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 || |||| || | | ||| | ||| | || || ||| | | || | || | Sbjct 100916 TGCTGGAGAACTTGGCACA-GCGCTTCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGC 100974 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| || ||| ||| || ||| | | ||||||||||||||||| | || | Sbjct 100975 TTCTACGGGTTCCAGATCGC-CATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCT 101033 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 |||| || ||| || || |||||||| | |||| | | |||||| ||| | Sbjct 101034 GGATACGTACATCACCGACTTGGTAGAGAAGGATCGTCTTCTGCATGCCATCTCAACGAT 101093 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCAT 59973 || | | | | | || || || ||||| || | |||||| | || | || | Sbjct 101094 TCCATGTATCCAGA-AGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGACTCGT 101152 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | ||| | |||||| | || || || ||||| || || |||||||||||||| |||| Sbjct 101153 TCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCT 101212 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | || | |||||||| || |||||||| || ||||| || |||| ||| |||||||| Sbjct 101213 GCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAACGAGC 101272 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT-- 60151 | || || ||||| ||||| || ||| || ||||| ||| | || | | | || Sbjct 101273 TCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGC-GTGCCTCTTGTATGAGAACTAC 101331 Query 60152 ATTGGAAAAATGCCCTTCC-AAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAG 60207 |||| || | | || || ||||| || || |||| | | ||| ||| || Sbjct 101332 ATTGTCAACAAG--CTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGC-GGTGGAG 101388 Query 60208 -TGGAGAGCGAGTTCATCACAGAAGCGCTTCCA-TGCAAACTCATAGGTATGGACGCTGG 60265 | ||| ||||||||||| || ||||||||| ||| ||| || || ||| || | | Sbjct 101389 ATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGTGC-GACTGATCGGGATGAACTCGGA 101447 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGG 60325 ||| | |||||| | || || |||||||| || ||| | |||| | | Sbjct 101448 TCTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGGCAACGA 101507 Query 60326 ACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385 || | |||| || || || || |||| ||||||| || |||||| | || || Sbjct 101508 ACGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAA 101567 Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| ||||||||||||||| ||| || || || Sbjct 101568 GACGAACTTCTTTGAGAAGAAGGTTGGTGAGTA 101600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522612757360