Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq244 203 4e-47
>seq244
Length=386007
Score = 203 bits (224), Expect = 4e-47
Identities = 544/813 (67%), Gaps = 19/813 (2%)
Strand=Plus/Plus
Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATT 59676
||||| | || ||||||||||| || | | || || ||| ||||| ||||| ||
Sbjct 100796 TCTGGACAGTGGAGGAGATTGATCTGGGCAATGATATGGTGGACTGGGAGAAGCTGAACG 100855
Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736
| | || | || ||||||||| ||||| || |||||||| |||||||| |||||||
Sbjct 100856 ATGGGGAACGACACTTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTG 100915
Query 59737 TGATGGAAAATATAG-ACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
|| |||| || | | ||| | ||| | || || ||| | | || | || |
Sbjct 100916 TGCTGGAGAACTTGGCACA-GCGCTTCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGC 100974
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| || ||| ||| || ||| | | ||||||||||||||||| | || |
Sbjct 100975 TTCTACGGGTTCCAGATCGC-CATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCT 101033
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913
|||| || ||| || || |||||||| | |||| | | |||||| ||| |
Sbjct 101034 GGATACGTACATCACCGACTTGGTAGAGAAGGATCGTCTTCTGCATGCCATCTCAACGAT 101093
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCAT 59973
|| | | | | | || || || ||||| || | |||||| | || | || |
Sbjct 101094 TCCATGTATCCAGA-AGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGACTCGT 101152
Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033
| ||| | |||||| | || || || ||||| || || |||||||||||||| ||||
Sbjct 101153 TCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCT 101212
Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093
| || | |||||||| || |||||||| || ||||| || |||| ||| ||||||||
Sbjct 101213 GCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAACGAGC 101272
Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT-- 60151
| || || ||||| ||||| || ||| || ||||| ||| | || | | | ||
Sbjct 101273 TCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGC-GTGCCTCTTGTATGAGAACTAC 101331
Query 60152 ATTGGAAAAATGCCCTTCC-AAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAG 60207
|||| || | | || || ||||| || || |||| | | ||| ||| ||
Sbjct 101332 ATTGTCAACAAG--CTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGC-GGTGGAG 101388
Query 60208 -TGGAGAGCGAGTTCATCACAGAAGCGCTTCCA-TGCAAACTCATAGGTATGGACGCTGG 60265
| ||| ||||||||||| || ||||||||| ||| ||| || || ||| || | |
Sbjct 101389 ATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGTGC-GACTGATCGGGATGAACTCGGA 101447
Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGG 60325
||| | |||||| | || || |||||||| || ||| | |||| | |
Sbjct 101448 TCTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGGCAACGA 101507
Query 60326 ACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385
|| | |||| || || || || |||| ||||||| || |||||| | || ||
Sbjct 101508 ACGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAA 101567
Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||| ||||||||||||||| ||| || || ||
Sbjct 101568 GACGAACTTCTTTGAGAAGAAGGTTGGTGAGTA 101600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548522612757360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |