Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq253 116 4e-21 seq197 116 4e-21 >seq253 Length=1126320 Score = 116 bits (128), Expect = 4e-21 Identities = 201/291 (69%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| | ||||||| | | ||||||||| |||||| ||||| || ||| ||| Sbjct 261751 CTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAATCACGCAGGGC 261810 Query 124613 ATCCAGGTTTCCGAGCTCGATTGGCTTGG------CCGTCTTGTTCCACTCCGCCAAACC 124666 | || || |||||| | | ||| || |||| | | | | ||| || Sbjct 261811 GTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGCACAGCCGCACG 261870 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 || |||||| ||||||||| | || ||||| ||||||||||||||||| Sbjct 261871 CAC---AATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAG 261927 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||| ||| | ||||| ||||| ||||||||||| |||||||| || ||||| | | Sbjct 261928 AATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGC 261987 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 |||| || | |||| | || ||||| || || ||||| |||||| ||| Sbjct 261988 GTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAA--GGGTGTCTTC 262036 Score = 116 bits (128), Expect = 4e-21 Identities = 201/291 (69%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| | ||||||| | | ||||||||| |||||| ||||| || ||| ||| Sbjct 266229 CTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAATCACGCAGGGC 266288 Query 124613 ATCCAGGTTTCCGAGCTCGATTGGCTTGG------CCGTCTTGTTCCACTCCGCCAAACC 124666 | || || |||||| | | ||| || |||| | | | | ||| || Sbjct 266289 GTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGCACAGCCGCACG 266348 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 || |||||| ||||||||| | || ||||| ||||||||||||||||| Sbjct 266349 CAC---AATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAG 266405 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||| ||| | ||||| ||||| ||||||||||| |||||||| || ||||| | | Sbjct 266406 AATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGC 266465 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 |||| || | |||| | || ||||| || || ||||| |||||| ||| Sbjct 266466 GTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAA--GGGTGTCTTC 266514 >seq197 Length=1752 Score = 116 bits (128), Expect = 4e-21 Identities = 201/291 (69%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| | ||||||| | | ||||||||| |||||| ||||| || ||| ||| Sbjct 950 CTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAATCACGCAGGGC 891 Query 124613 ATCCAGGTTTCCGAGCTCGATTGGCTTGG------CCGTCTTGTTCCACTCCGCCAAACC 124666 | || || |||||| | | ||| || |||| | | | | ||| || Sbjct 890 GTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGCACAGCCGCACG 831 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 || |||||| ||||||||| | || ||||| ||||||||||||||||| Sbjct 830 CAC---AATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGGTTGAACAG 774 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||| ||| | ||||| ||||| ||||||||||| |||||||| || ||||| | | Sbjct 773 AATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATCCAGAAGGC 714 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 |||| || | |||| | || ||||| || || ||||| |||||| ||| Sbjct 713 GTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAA--GGGTGTCTTC 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213817976200