Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq244 154 2e-32 seq253 107 2e-18 seq197 107 2e-18 >seq244 Length=386007 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| | || |||||||| ||| | || ||||| ||| | Sbjct 42131 ATTATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCC 42190 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| ||| ||||||| || ||||||||||||||||| ||||| || || Sbjct 42191 AGCGACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGAT 42250 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||||| || |||||||||||||| || ||||| | || ||||| || ||||| Sbjct 42251 CAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTAC 42310 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||| || || || || | || || || || || Sbjct 42311 AACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCCGTGGAGG 42360 Score = 149 bits (164), Expect = 7e-31 Identities = 377/571 (66%), Gaps = 2/571 (0%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCC-ATCGCAAGTTTCTG 64355 || || || | ||||| || | ||| || |||||| | ||| | ||| || |||| Sbjct 100741 TTTCCTATCAAGTACCACGACGTCTGGCAGAAATACAAGGAGGCCGAGAGCA-GTATCTG 100799 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 ||| || |||||| ||||||| | ||| ||| | |||||||| || || ||| Sbjct 100800 GACAGTGGAGGAGATTGATCTGGGCAATGATATGGTGGACTGGGAGAAGCTGAACGATGG 100859 Query 64416 GGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTT 64475 ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| | Sbjct 100860 GGAACGACACTTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCT 100919 Query 64476 TGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTA 64535 ||||| |||| | || | | || || ||| | || || | ||| | ||||| Sbjct 100920 GGAGAACTTGGCACAGCGCTTCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTA 100979 Query 64536 TGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACAA 64595 | || ||| | || | | | || ||||||||| || | || | || | Sbjct 100980 CGGGTTCCAGATCGCCATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATAC 101039 Query 64596 GTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGC 64655 || | || || ||||||||| | || | || || || | || Sbjct 101040 GTACATCACCGACTTGGTAGAGAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATG 101099 Query 64656 TGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTTTGGTCA 64715 | | || ||||| || ||||| ||||||||||| ||| ||||| | | Sbjct 101100 TATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGACTCGTTCGCAGA 101159 Query 64716 GCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTAT 64775 |||||||| || || ||| ||||| || || ||||| ||||| |||||||| | | Sbjct 101160 GCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCACT 101219 Query 64776 TTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTC 64835 |||||||| || ||||| || |||||||| || ||| |||| |||||||| ||||| Sbjct 101220 GTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTC 101279 Query 64836 TCGGGACGAGGGGCTCCACCAAGAATTTGCG 64866 ||||| ||||| || || || |||||| Sbjct 101280 GCGGGATGAGGGTCTGCATACCGACTTTGCG 101310 >seq253 Length=1126320 Score = 107 bits (118), Expect = 2e-18 Identities = 215/324 (66%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| | ||||| |||||||| ||| | || || ||| ||||||||| Sbjct 262234 CGAGGTGTACAACCTCGCCGCCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTA 262175 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||||| | || || | || | || | || ||||| || || || Sbjct 262174 CACGGGGCAGACAGACGCCATTGGTGCTCTGAAGATCCTTGACGCCATCCGTGCGAATGG 262115 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | | || || ||||| | || || ||| ||| || |||||||| Sbjct 262114 CTTGGAGAAGACGTGTCGCTTCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCA 262055 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||| ||| ||||| |||| || || || ||||| || ||||| || | || | || Sbjct 262054 GGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAA 261995 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | | ||| | |||||| || ||||||||||||| | | || || | || ||||| Sbjct 261994 ACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAA 261935 Query 24884 CGGAATTCTGTTCAACCATGAGTC 24907 || |||||||||||||| ||||| Sbjct 261934 TGGTATTCTGTTCAACCACGAGTC 261911 Score = 107 bits (118), Expect = 2e-18 Identities = 215/324 (66%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| | ||||| |||||||| ||| | || || ||| ||||||||| Sbjct 266712 CGAGGTGTACAACCTCGCCGCCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTA 266653 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||||| | || || | || | || | || ||||| || || || Sbjct 266652 CACGGGGCAGACAGACGCCATTGGTGCTCTGAAGATCCTTGACGCCATCCGTGCGAATGG 266593 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | | || || ||||| | || || ||| ||| || |||||||| Sbjct 266592 CTTGGAGAAGACGTGTCGCTTCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCA 266533 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||| ||| ||||| |||| || || || ||||| || ||||| || | || | || Sbjct 266532 GGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAA 266473 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | | ||| | |||||| || ||||||||||||| | | || || | || ||||| Sbjct 266472 ACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAA 266413 Query 24884 CGGAATTCTGTTCAACCATGAGTC 24907 || |||||||||||||| ||||| Sbjct 266412 TGGTATTCTGTTCAACCACGAGTC 266389 >seq197 Length=1752 Score = 107 bits (118), Expect = 2e-18 Identities = 215/324 (66%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| | ||||| |||||||| ||| | || || ||| ||||||||| Sbjct 467 CGAGGTGTACAACCTCGCCGCCCAATCACACGTGAAGGTCTCCTTCGACACACCCGAGTA 526 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||||| | || || | || | || | || ||||| || || || Sbjct 527 CACGGGGCAGACAGACGCCATTGGTGCTCTGAAGATCCTTGACGCCATCCGTGCGAATGG 586 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | | || || ||||| | || || ||| ||| || |||||||| Sbjct 587 CTTGGAGAAGACGTGTCGCTTCTACCAGGCAAGCACAAGCGAGTTGTACGGAAAGGTGCA 646 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||| ||| ||||| |||| || || || ||||| || ||||| || | || | || Sbjct 647 GGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGCAGCCCATACGCCGTGGCGAA 706 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | | ||| | |||||| || ||||||||||||| | | || || | || ||||| Sbjct 707 ACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCGTACGGTATGTTCGCGTGCAA 766 Query 24884 CGGAATTCTGTTCAACCATGAGTC 24907 || |||||||||||||| ||||| Sbjct 767 TGGTATTCTGTTCAACCACGAGTC 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308125887280