Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq244 131 1e-25 >seq244 Length=386007 Score = 131 bits (144), Expect = 1e-25 Identities = 289/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Minus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| || ||||| || || ||||| | |||||||| | |||||||| ||||||||||| Sbjct 101586 CTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCATAAAGTCAAACGGATT 101527 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 ||| ||||||||| ||| || || || |||| |||||| || || ||||| Sbjct 101526 CTTTGATTTGTAATGTCGTTCGTTGCCAAGTGCGACCAGCAGTCGGTCCGCCACGAATTC 101467 Query 4397 TATATA-CTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATG 4455 || || | || |||||| || |||| || || || | || ||| || ||||| || Sbjct 101466 AATGTATGTTGC-CATGAGATCCGAGTTCATCCCGATCAGTCGCACTGGAAGCGC--ATC 101410 Query 4456 TCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTT 4513 || | ||||| | || || || || || ||| || || | ||| || || Sbjct 101409 GCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCATGGATTCGCTCCTT 101350 Query 4514 AGATGGTTTATTTACTAAGTA--TC-CAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | | || || || | ||| || || |||| | |||||||| || ||||| ||| Sbjct 101349 TGGCAGCTTGTTGACAATGTAGTTCTCATACAAGAGGCACGCAAAGTCGGTATGCAGACC 101290 Query 4571 TTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 || || | || | || || ||||| ||||| | ||||||||| | ||| | ||| | Sbjct 101289 CTCATC-CCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCACGCTTCT 101231 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || | Sbjct 101230 TCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGCGGCGAATG 101171 Query 4690 CTAC 4693 | || Sbjct 101170 CAAC 101167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047939711227