Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq22 266 4e-66 >seq22 Length=626277 Score = 266 bits (294), Expect = 4e-66 Identities = 1138/1759 (65%), Gaps = 72/1759 (4%) Strand=Plus/Plus Query 76813 TACGTAGATAGTACATACCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTT 76871 |||| | || |||||||| || |||||||| ||| | |||| |||||||||||| | Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 76872 GTCAGTTTGGAATAACTAG-GATCGGCTAT---ATGAATATTCATCGACT--GACTTTGA 76925 |||| | | ||| | | | || | | | |||| | ||| |||| ||| Sbjct 346423 GTCA------ACTGACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGA 346476 Query 76926 TCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTT-TGAGGAATTTCCCA 76984 || | | | ||| | ||| || ||||| | || | ||| | || |||||||||| Sbjct 346477 TCAACGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCA 346535 Query 76985 AATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT--TTG-TATTTTGAATGGAACC 77041 | | ||| | | || || | |||| ||||| | ||| |||| |||| ||||| Sbjct 346536 GACAACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACC 346595 Query 77042 ACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAAC 77101 | || || ||||| ||| |||||||||||||| || | | | | ||| | Sbjct 346596 ATTATATGCAATAATCTGATTTCGCATATCATCATTCCA-AAGTCCAAGTTTAATAAGAT 346654 Query 77102 TC-TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 | ||| |||| |||||| | | ||||| ||| | || | ||| |||| Sbjct 346655 CCATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAA 346714 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 |||| ||| | ||||| | | | ||||| || || | |||||||| || || |||| Sbjct 346715 TATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAG 346774 Query 77221 TTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 ||||||| || |||| | |||| |||||| | |||| ||| | | || || | Sbjct 346775 TTGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAA 346834 Query 77281 GATATTTCCAATCCCAAAGATC--TGAA-GGTACAACATCCCAAAGATCGTATTGTAGAA 77337 | | ||| | ||| | | || ||| | |||| | ||| |||||| | Sbjct 346835 GTGCATCCCAGTTCCACCGTCCACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAATA 346894 Query 77338 TTCCGTTACTAGCATATGA-TCCATT-ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 || | | |||| || ||| || | || ||||||| ||||||||| |||||| || Sbjct 346895 AACCTTGAGAAGCAG--GACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAG 346952 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT-ATTGAGAT 77454 || || ||||||| ||| ||||||||||||| || ||||| ||||| ||| | || Sbjct 346953 ATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAAT 347011 Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAA----GAATAAAGGCATCTGCTAAT 77510 ||| || | | | ||| ||| ||| || | ||||||| ||||| | | Sbjct 347012 CTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATT 347067 Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTA---GCTTCTGGA 77567 || || || |||||||| ||||||| || | | |||| | | | |||| ||| Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATT---ACTGTCGCGTGCTTGTGGT 347124 Query 77568 ATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACG 77627 | ||||||||||| || || |||| | | || | |||||| || ||||| | Sbjct 347125 AACGGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATT 347184 Query 77628 TCCTTTAGTTTAAGAAAATCAAA-------TCTTCC--ATCTATAACAAACATGTTCAAA 77678 || | |||| | |||||| | |||| ||| |||| ||| | | ||| Sbjct 347185 TCATATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAA--AACGAGGT-AAA 347241 Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTC 77737 || ||||| || || ||||| ||||| | |||| | | || |||| || || || Sbjct 347242 GCAATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAGATGAG-TATTCCATGATTTC 347300 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 || |||| |||| ||| ||||| || | |||| ||||| || ||||| || Sbjct 347301 TGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACA 347360 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 || || ||||| || ||||| ||| || ||||| || |||||||| | |||| Sbjct 347361 TGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAA 347420 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTC--TTTCATATTGAGTA 77915 ||| | || |||| || | ||| | | | || || ||||||| | | Sbjct 347421 CCAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTTTTCATAACGTTCA 347478 Query 77916 TATAGCCGTTCAAATTCATCTCCCCA-AACA-TCATCCAATCCAGG-GCATTCATTTGGG 77972 |||| | | |||||| ||| ||| |||| ||| ||||| || ||| | |||||| Sbjct 347479 TATAACTCATTAAATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGGA 347535 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||| | || ||| | | || || | || |||| ||| || | |||||| ||||| Sbjct 347536 TCCATAAGTGTCCACTTATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAATCCAC 347595 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || ||| ||| || || || | | || ||||| ||||| |||||||| || || | Sbjct 347596 AGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGTAAG 347655 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 || || | | |||||| |||||| ||||| ||||| | || | | || ||| Sbjct 347656 AGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCGT 347715 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||| ||| || ||||||| ||| | || |||||||| | || | | ||| || | | Sbjct 347716 TTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTACA 347775 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 | || || ||||||||||| ||||| | ||||||||||||| | |||||||||| | Sbjct 347776 AGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTATGA 347835 Query 78273 --ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTAT 78330 ||| | | || || || || ||||| ||| || | ||| || |||| | ||||| Sbjct 347836 ACATGAACA--CCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTAT 347893 Query 78331 CGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 78390 | || || ||||| ||||| || || ||| || ||| ||||| | |||||| Sbjct 347894 CATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGTG 347953 Query 78391 GATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAA 78450 | | || || | |||||||| || |||| ||||| ||||| || ||| | Sbjct 347954 GGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAATCCCAGAGACA 348013 Query 78451 GTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACAC 78510 || || |||||||| | | || | || | |||||| |||| ||||| | Sbjct 348014 TTAAATCATATGTTTCCTTTACACGTTTCAAATCTTCTCCATGAATACCTAAAGCTACCC 348073 Query 78511 GCATCAACATATGCTGAGG 78529 | | |||||||| || || Sbjct 348074 GAAGAAACATATGTTGTGG 348092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666030008160