Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq22 282 6e-71 >seq22 Length=626277 Score = 282 bits (312), Expect = 6e-71 Identities = 923/1408 (66%), Gaps = 41/1408 (3%) Strand=Plus/Plus Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 |||||||| ||| | ||||| | | | ||||| || || | |||||||| ||||| Sbjct 346711 TAAATATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGAT 346770 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 ||||| ||||| || |||| | |||| |||||| | |||| ||| | | || Sbjct 346771 GCAGTTGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCC 346830 Query 75872 TTTAGATATTTCCAATCCCAAAGATC--TGA-TGGTACAACATCCCAGAGATCGTATTGT 75928 || || | ||| | ||| | | || |||| | |||| | ||| ||||| Sbjct 346831 TTAAGTGCATCCCAGTTCCACCGTCCACTGCGTGGTTTTTTACCCCATAAATCAAATTGT 346890 Query 75929 AGAATTCCGTTGCTAGCATATGA-TCCATT-ATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 | | || | |||| || ||| || | || |||| || | || || | ||||| Sbjct 346891 AATAAACCTTGAGAAGCAG--GACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAG 346948 Query 75987 CTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTT-ATTA 76045 | || ||| || || || | || ||||||||||||| || ||||| ||||| ||| Sbjct 346949 CAAGATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTT 347007 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 | ||||| || | | ||| ||| ||| || | | ||| |||||| | | Sbjct 347008 AAATCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATCTGCCATT 347067 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCA---GCTTCTGGA 76162 || || || |||||||| ||||||| || | | |||| | | || |||| ||| Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATT---ACTGTCGCGTGCTTGTGGT 347124 Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACG 76222 | || |||||||| ||||| |||| | | || | |||||| || ||||| | Sbjct 347125 AACGGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATT 347184 Query 76223 TCCTTTAGTT-----TGAG-AAAATCAAATTTTCCATCTATCAC--AAACATATTAAGAG 76274 || | |||| ||| |||| || |||| | || |||| |||| ||| || Sbjct 347185 TCATATAGTCGTTGGTGATCAAAAACATTTTTTTCCTC-ATCAATAAAACGAGGTAA-AG 347242 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCAT---TAGCATTGGCATATTGTATTATCT 76331 | ||||| || || ||||| || || | |||| ||| || | |||| || || | Sbjct 347243 CAATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTT 347299 Query 76332 CCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC 76391 | ||||||| |||| ||||||||| |||| |||| ||||| || || |||| Sbjct 347300 CTGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTAC 347359 Query 76392 ATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATT 76451 ||| || ||||| || | ||| ||| ||| ||||| || |||||||| | |||| Sbjct 347360 ATGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAA 347419 Query 76452 TCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTC--TTTCATATTGTGT 76509 ||| | || |||| ||| | ||| | | | || || ||||||| || Sbjct 347420 ACCAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTTTTCATAACGTTC 347477 Query 76510 ATATAACCGTTCAAATTCATCTCCCCA-AACA-TCATCCAAACCAGGA-CATTCATTCGG 76566 ||||||| | |||||| ||| ||| |||| ||| || || || || | ||| || Sbjct 347478 ATATAACTCATTAAATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGG 347534 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 | ||| | || ||||| | || || | || |||| ||| || | |||||| ||||| Sbjct 347535 ATCCATAAGTGTCCACTTATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAATCCA 347594 Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATC 76686 || ||| ||| || || || | | | ||||| ||||| |||||||| || || Sbjct 347595 CAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGTAA 347654 Query 76687 TAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCG 76746 ||||| | | |||||| |||||| ||||| ||||| | || | ||||| || Sbjct 347655 GAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCG 347714 Query 76747 TTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 |||| ||| || ||||||| ||| | || |||||||| | || | | ||| || | Sbjct 347715 TTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTAC 347774 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 || || || ||||| ||||| ||||| | ||||||||||||| | ||||||||| Sbjct 347775 AAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTATG 347834 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || | | || || || || ||||||||| ||| | |||||| |||| | ||| || Sbjct 347835 AACATGAACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTATC 347894 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 ||| || ||||| |||||||| || ||| || ||| ||||| | |||||| | Sbjct 347895 ATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGTGG 347954 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG 77046 | || || | ||||| || || |||| ||||| || || || ||| | Sbjct 347955 GTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAATCCCAGAGACAT 348014 Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 || || |||||||| | || || | ||| | |||||| |||| ||| || || Sbjct 348015 TAAATCATATGTTTCCTTTACACGTTTCAAATCTTCTCCATGAATACCTAAAGCTACCCG 348074 Query 77107 CATCAACATATGCTGAGGTCGTTCTACA 77134 | |||||||| || || || |||||| Sbjct 348075 AAGAAACATATGTTGTGGACGCTCTACA 348102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931557174080