Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq244 163 6e-35 seq253 98.7 2e-15 seq197 98.7 2e-15 >seq244 Length=386007 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || ||||| || | |||| || || || ||||||||||| || Sbjct 42361 ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 42302 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||| | ||| ||||| || || Sbjct 42301 CAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGG 42242 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || |||||||| || || | || | |||||| || || || Sbjct 42241 AATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCAC 42182 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | || ||||| || ||||| ||||| ||||| |||||||| Sbjct 42181 CTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || ||||| || | |||| || || || ||||||||||| || Sbjct 41532 ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 41473 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| ||||| || || || || |||||||| | ||| ||||| || Sbjct 41472 CAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATC 41419 >seq253 Length=1126320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 43999 GAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGG 44058 ||||||||||||||||| |||||| | || || |||| | ||| || || ||||| || Sbjct 262074 GAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGC 262015 Query 44059 AGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCG 44118 || ||||| | |||||||| || || |||| |||||| || || || |||||| Sbjct 262014 AGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCG 261955 Query 44119 TATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCC 44166 || || ||||||| || ||| ||| ||||| |||| |||||| Sbjct 261954 TACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACG--AGTCCC 261909 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 43999 GAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGG 44058 ||||||||||||||||| |||||| | || || |||| | ||| || || ||||| || Sbjct 266552 GAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGC 266493 Query 44059 AGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCG 44118 || ||||| | |||||||| || || |||| |||||| || || || |||||| Sbjct 266492 AGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCG 266433 Query 44119 TATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCC 44166 || || ||||||| || ||| ||| ||||| |||| |||||| Sbjct 266432 TACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACG--AGTCCC 266387 >seq197 Length=1752 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 43999 GAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGG 44058 ||||||||||||||||| |||||| | || || |||| | ||| || || ||||| || Sbjct 627 GAGTTGTACGGAAAGGTGCAGGAGGTGCCGCAGTCAGAGAAGACACCCTTCTATCCACGC 686 Query 44059 AGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCG 44118 || ||||| | |||||||| || || |||| |||||| || || || |||||| Sbjct 687 AGCCCATACGCCGTGGCGAAACTCTACGCCTTCTGGATTACAGTGAACTACCGTGAGTCG 746 Query 44119 TATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCC 44166 || || ||||||| || ||| ||| ||||| |||| |||||| Sbjct 747 TACGGTATGTTCGCGTGCAATGGTATTCTGTTCAACCACG--AGTCCC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734921780626