Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq244 125 5e-24 >seq244 Length=386007 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| |||||| || |||||||| || || || ||| | || || Sbjct 42343 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 42284 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| | |||||| ||||| | || | ||| ||||| ||| Sbjct 42283 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 42224 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | |||||| || |||||||| | | ||| ||||| Sbjct 42223 AATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTT 42164 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | ||||| |||||||| ||||| ||| Sbjct 42163 GCCTGTCAATGTCTTTACGAAGATCTGCATAATG 42130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| |||||| || |||||||| || || || ||| | || || Sbjct 41514 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 41455 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| || |||||||| | |||||| ||||| Sbjct 41454 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATC 41419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989000424823