Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq244 105 2e-17 >seq244 Length=386007 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | ||||| || || || ||||||||||||| | ||| Sbjct 42137 CAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGCGAC 42196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | ||||| || || ||||||||||||||| || || || || ||||| || || Sbjct 42197 ACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAACAG 42256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| || || || | || || || || || ||| | Sbjct 42257 CGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAACATT 42316 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 42317 CAGAAGGAGTCCACGCTGCACCTGGT 42342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726280124886