Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq244 163 3e-35 seq286 89.7 5e-13 >seq244 Length=386007 Score = 163 bits (180), Expect = 3e-35 Identities = 180/236 (76%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || || || || || | |||||| ||||||||| ||||||||||||||| | Sbjct 42367 CATCACA-CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGT 42309 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | |||||||| | || || |||||||| || || || || || |||||||| | Sbjct 42308 AGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGAT 42249 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTC 41806 ||| ||||| | |||||||||| ||| | ||||| |||| | ||||||||||| Sbjct 42248 CCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTG 42190 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||||| | | || || || || |||| ||||||||||| |||||||| Sbjct 42189 GCCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 100 bits (110), Expect = 3e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || || || || || | |||||| ||||||||| ||||||||||||||| | Sbjct 41538 CATCACA-CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGT 41480 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | |||||||| | || || |||||||| || || || || || |||||||| | Sbjct 41479 AGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGAT 41420 Query 41748 CCGCGGG 41754 ||| ||| Sbjct 41419 CCGGGGG 41413 >seq286 Length=961496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||||||| ||||||||||||||| ||||| | Sbjct 812618 CCTCCACGGAGGCGGAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCCGCC 812677 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||| || || || || || |||||||| |||| ||| Sbjct 812678 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAAATAAGACGCTGTTGATCCGGGGG 812736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302156562800