Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 123 3e-23
seq959 100 3e-16
>seq1295
Length=44835
Score = 123 bits (136), Expect = 3e-23
Identities = 420/647 (65%), Gaps = 12/647 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| ||||| | |||||||||||| | ||| | || | || ||| ||||||||
Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATG 17414
Query 54041 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099
|| | || || |||||||| || || ||| || || | | | ||| || || ||
Sbjct 17415 AACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCC 17473
Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159
||||| || |||||||| | | || || | ||||||||| || | || ||
Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533
Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219
|| | | || || || ||||| || || ||||| | || | || ||||| || ||
Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593
Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279
|| | | ||| || | | || || || | ||||| || || ||||| ||
Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653
Query 54280 ACTGGCACGAAT----ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335
| || ||||| ||| |||| |||||||| || || || | || ||||| |
Sbjct 17654 TGTTGCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCA 17709
Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395
|||||| ||| | || ||||| |||||||| ||||| || ||| |||||| || |
Sbjct 17710 TGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCA 17769
Query 54396 GAAAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454
||||| || || |||| | || || || || | || | ||| || |||||
Sbjct 17770 AGAAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCA 17828
Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514
|| || || | || | || | || ||||| |||||||| || | || || ||
Sbjct 17829 TGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCG 17888
Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574
|| || || || || |||||||| | |||||| || ||||| || | || || |
Sbjct 17889 CCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCG 17948
Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621
| ||| |||| | || || ||| | ||| || || ||||||||
Sbjct 17949 TCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995
>seq959
Length=28360
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184
||| | || ||| ||||| || ||| | ||||| || | ||| | ||||||||
Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128
Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244
||| || || |||||||| || ||||||||||| ||||| || ||||| || || || |
Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068
Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279
||| |||||||| || ||||| || || || ||||
Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593709109581840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |